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SHLD1 shieldin complex subunit 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 458086, updated on 29-Mar-2024

Summary

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Official Symbol
SHLD1provided by VGNC
Official Full Name
shieldin complex subunit 1provided by VGNC
Primary source
VGNC:VGNC:6067
Locus tag
CK820_G0017545
See related
Ensembl:ENSPTRG00000013229
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
C20H20orf196
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 21 NC_072419.2 (12323522..12428390)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 20 NC_072418.1 (12334810..12439680)

Chromosome 21 - NC_072419.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein uS13-like Neighboring gene eukaryotic translation initiation factor 4E-like Neighboring gene glycerophosphocholine phosphodiesterase 1 Neighboring gene U1 spliceosomal RNA Neighboring gene chromogranin B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of isotype switching IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
shieldin complex subunit 1
Names
C20orf196
chromosome 20 C20orf196 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072419.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    12323522..12428390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009436767.4 → XP_009435042.3  shieldin complex subunit 1 isoform X2

  2. XM_001166641.7 → XP_001166641.3  shieldin complex subunit 1 isoform X3

  3. XM_063802598.1 → XP_063658668.1  shieldin complex subunit 1 isoform X6

  4. XM_063802599.1 → XP_063658669.1  shieldin complex subunit 1 isoform X7

  5. XM_063802597.1 → XP_063658667.1  shieldin complex subunit 1 isoform X5

  6. XM_054674845.2 → XP_054530820.1  shieldin complex subunit 1 isoform X4

  7. XM_054674844.2 → XP_054530819.1  shieldin complex subunit 1 isoform X1

  8. XM_063802600.1 → XP_063658670.1  shieldin complex subunit 1 isoform X7

  9. XM_063802595.1 → XP_063658665.1  shieldin complex subunit 1 isoform X3

  10. XM_009436768.5 → XP_009435043.3  shieldin complex subunit 1 isoform X3

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials