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CADM3 cell adhesion molecule 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 457426, updated on 29-Mar-2024

Summary

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Official Symbol
CADM3provided by VGNC
Official Full Name
cell adhesion molecule 3provided by VGNC
Primary source
VGNC:VGNC:460
Locus tag
CK820_G0041409
See related
Ensembl:ENSPTRG00000001520
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (90001333..90032812, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (141316919..141347268)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene olfactory receptor 10J1-like Neighboring gene uncharacterized LOC107968877 Neighboring gene atypical chemokine receptor 1 Neighboring gene absent in melanoma 2 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene cell cycle checkpoint protein RAD1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in presynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell adhesion molecule 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    90001333..90032812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_513915.9 → XP_513915.2  cell adhesion molecule 3 isoform X1

    See identical proteins and their annotated locations for XP_513915.2

    UniProtKB/TrEMBL
    A0A2I3REI3, A0A2I3S8H6, A0A2J8K5T5, A0A6D2X588
    Related
    ENSPTRP00000062797.1
    Conserved Domains (4) summary
    smart00294
    Location:352 → 367
    4.1m; putative band 4.1 homologues' binding motif
    cd05882
    Location:30 → 124
    Ig1_Necl-1; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))
    cd07705
    Location:145 → 227
    Ig2_Necl-1; Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))
    smart00410
    Location:243 → 314
    IG_like; Immunoglobulin like

  2. XM_001170513.7 → XP_001170513.1  cell adhesion molecule 3 isoform X2

    See identical proteins and their annotated locations for XP_001170513.1

    UniProtKB/TrEMBL
    A0A2I3S8H6, A0A2J8K5S7, A0A6D2WQ21, H2RCX8
    Related
    ENSPTRP00000057979.1
    Conserved Domains (4) summary
    smart00294
    Location:386 → 401
    4.1m; putative band 4.1 homologues' binding motif
    cd05882
    Location:64 → 158
    Ig1_Necl-1; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))
    cd07705
    Location:179 → 261
    Ig2_Necl-1; Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))
    smart00410
    Location:277 → 348
    IG_like; Immunoglobulin like

  3. XM_063796299.1 → XP_063652369.1  cell adhesion molecule 3 isoform X3

Nucleotide Protein
Heading Accession and Version

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