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    MTR 5-methyltetrahydrofolate-homocysteine methyltransferase [ Homo sapiens (human) ]

    Gene ID: 4548, updated on 16-Jun-2013
    Official Symbol
    MTRprovided by HGNC
    Official Full Name
    5-methyltetrahydrofolate-homocysteine methyltransferaseprovided by HGNC
    Primary source
    HGNC:7468
    See related
    Ensembl:ENSG00000116984; HPRD:01136; MIM:156570; Vega:OTTHUMG00000040060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MS; cblG
    Summary
    MTR encodes the enzyme 5-methyltetrahydrofolate-homocysteine methyltransferase. This enzyme, also known as cobalamin-dependent methionine synthase, catalyzes the final step in methionine biosynthesis. Mutations in MTR have been identified as the underlying cause of methylcobalamin deficiency complementation group G. [provided by RefSeq, Jul 2008]
    Location :
    1q43
    Sequence :
    Chromosome: 1; NC_000001.10 (236958581..237067281)

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene lectin, galactoside-binding, soluble, 8 Neighboring gene HEAT repeat containing 1 Neighboring gene actinin, alpha 2 Neighboring gene ribosomal protein SA pseudogene 21 Neighboring gene ribosomal protein L35 pseudogene 1 Neighboring gene metallothionein 1H-like 1

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    METHYLCOBALAMIN DEFICIENCY, cblG TYPE

    Summary from GeneReviews: Disorders of Intracellular Cobalamin Metabolism Go to GeneReviews

    Disease Characteristics
    The clinical manifestations of disorders of intracellular cobalamin metabolism, identified by complementation class as cblC, cblD, cblD variant 1, cblD variant 2, cblF, cblE, and cblG, can be highly variable even within a single complementation class. The prototype and best understood is cblC; it is also the most common of these disorders. The age of initial presentation of cblC ranges from (1) newborns who can be small for gestational age (SGA) and have microcephaly; to (2) infants who can have poor feeding, failure to thrive, pallor, and neurologic signs, and occasionally hemolytic uremic syndrome (HUS) and/or seizures including infantile spasms; to (3) toddlers who can have failure to thrive, poor head growth, cytopenias (including megaloblastic anemia), global developmental delay, encephalopathy, and neurologic signs such as hypotonia and seizures; and to (4) young adults/adults who can have confusion, other mental status changes, cognitive decline, and megaloblastic anemia.
    Diagnosis Testing
    Metabolic screening tests such as urine organic acid analysis and plasma amino acid analysis help categorize the clinical syndrome. Analysis in specialized laboratories can establish the specific complementation class. Mutations in the following five genes (and their complementation groups) cause the known disorders of intracellular cobalamin metabolism: MMACHC (cblC), MMADHC (cblD), MTRR (cblE), LMBRD1 (cblF), and MTR (cblG). The role of molecular genetic testing in diagnosis is evolving; molecular genetic testing may be faster and less expensive than complementation class analysis in establishing a specific diagnosis in a family.
    Genetic Counseling
    All disorders of intracellular cobalamin metabolism are inherited in an autosomal recessive manner. Heterozygotes (carriers) are asymptomatic. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations in a family are known. Enzyme analysis of cultured fetal cells can also be used for prenatal diagnosis if the diagnosis has been confirmed in an affected family member using biochemical methods.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q99707 P63167 DYNLL1    HPRD  PubMed  
    BioGRID:110642 BioGRID:115803 ARPC1A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110642 BioGRID:115415 ARPC2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110642 BioGRID:107263 CALU    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110642 BioGRID:107463 CDKN2A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110642 BioGRID:114027 DHX16    BioGRID  PubMed Co-fractionation 
    BioGRID:110642 BioGRID:124789 DPP9    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110642 BioGRID:108309 ELAVL1    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:110642 BioGRID:109821 ILF2    BioGRID  PubMed Co-fractionation 
    BioGRID:110642 BioGRID:117336 LSM4    BioGRID  PubMed Co-fractionation 
    BioGRID:110642 BioGRID:114304 NAPG    BioGRID  PubMed Co-fractionation 
    BioGRID:110642 BioGRID:120311 THG1L    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110642 BioGRID:113018 TPD52L2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110642 BioGRID:114374 TSC22D1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110642 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110642 BioGRID:115791 UBD    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Clone Names

    • FLJ33168, FLJ43216, FLJ45386

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    cobalamin binding IEA
    Inferred from Electronic Annotation
    more info
     
    homocysteine S-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    methionine synthase activity IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cellular nitrogen compound metabolic process TAS
    Traceable Author Statement
    more info
     
    methylation TAS
    Traceable Author Statement
    more info
     
    nervous system development TAS
    Traceable Author Statement
    more info
    PubMed 
    pteridine-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    sulfur amino acid metabolic process TAS
    Traceable Author Statement
    more info
     
    xenobiotic metabolic process TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
     
    cytosol TAS
    Traceable Author Statement
    more info
     
    Preferred Names
    methionine synthase
    Names
    methionine synthase
    cobalamin-dependent methionine synthase
    vitamin-B12 dependent methionine synthase
    5-methyltetrahydrofolate-homocysteine methyltransferase 1
    NP_000245.2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008959.1 RefSeqGene

      Range
      5001..113701
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000254.2NP_000245.2  methionine synthase

      Status: REVIEWED

      Source sequence(s)
      AL359259, DC377743, U73338, U75743
      Consensus CDS
      CCDS1614.1
      UniProtKB/Swiss-Prot
      Q99707
      Related
      ENSP00000355536, OTTHUMP00000037964, ENST00000366577, OTTHUMT00000096632
      Conserved Domains (5) summary
      cd00740
      Location:371627
      Blast Score: 991
      MeTr; MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent ...
      cd02069
      Location:671897
      Blast Score: 913
      methionine_synthase_B12_BD; B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
      COG0646
      Location:21340
      Blast Score: 913
      MetH; Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
      pfam02965
      Location:10941230
      Blast Score: 398
      Met_synt_B12; Vitamin B12 dependent methionine synthase, activation domain
      PRK09490
      Location:191261
      Blast Score: 5414
      metH; B12-dependent methionine synthase; Provisional

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p10 Primary Assembly

      Range
      236958581..237067281
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      207414687..207523271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018912.1 Alternate CHM1_1.0

      Range
      243759261..243867976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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