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CAVIN1 caveolae associated protein 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 454684, updated on 29-Mar-2024

Summary

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Official Symbol
CAVIN1provided by VGNC
Official Full Name
caveolae associated protein 1provided by VGNC
Primary source
VGNC:VGNC:48941
Locus tag
CK820_G0038989
See related
Ensembl:ENSPTRG00000040069
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
PTRF
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 19 NC_072417.2 (25721002..25742058)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 17 NC_072415.1 (23905697..23926519)

Chromosome 19 - NC_072417.2Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V0 subunit a1 Neighboring gene U7 small nuclear RNA Neighboring gene signal transducer and activator of transcription 3 Neighboring gene signal transducer and activator of transcription 5A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA primary transcript binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in termination of RNA polymerase I transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase I promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in caveola IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caveolae associated protein 1; caveolae-associated protein 1
Names
polymerase I and transcript release factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072417.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    25721002..25742058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016931785.4 → XP_016787274.1  caveolae-associated protein 1

    UniProtKB/TrEMBL
    A0A2J8KFU8, A0A6D2WDP7, H2RE35
    Related
    ENSPTRP00000059770.2
    Conserved Domains (1) summary
    pfam15237
    Location:49 → 320
    PTRF_SDPR; PTRF/SDPR family
Nucleotide Protein
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Research Materials
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