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    ogre optic ganglion reduced [ Drosophila melanogaster ]

    Gene ID: 45382, updated on 25-May-2012
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    Summary

    Official Symbol
    ogreprovided by Flybase
    Official Full Name
    optic ganglion reducedprovided by Flybase
    Primary source
    FLYBASE:FBgn0004646
    Locus tag
    Dmel_CG3039
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    cb-8; CB8; CG3039; Dm-inx1; Dmel\CG3039; inx-1; inx1; Inx1; jnL3; l(1)6Ec; l(1)jnL3; l(1)ogre
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    Genomic context

    Location :
    6E4-6E4; 1-18.8 cM
    Sequence :
    Chromosome: X; NC_004354.3 (6868067..6885458, complement)
    See ogre in Epigenomics, MapViewer

    Chromosome X - NC_004354.3Genomic Context describing neighboring genes Neighboring gene CG4586 gene product from transcript CG4586-RA Neighboring gene CG3040 gene product from transcript CG3040-RA Neighboring gene boudin Neighboring gene innexin 7 Neighboring gene innexin 2 Neighboring gene carmine

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Heterotypic gap junctions between two neurons in the drosophila brain are critical for memory. Wu CL, et al. Curr Biol, 2011 May 24. PMID 21530256.
    2. Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq. Lott SE, et al. PLoS Biol, 2011 Feb 8. PMID 21346796.
    3. Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. Blanco E, et al. BMC Dev Biol, 2010 Sep 2. PMID 20813047.
    4. Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster. Venken KJ, et al. Nat Methods, 2009 Jun. PMID 19465919.
    5. Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution. Quijano C, et al. Genome Biol, 2008. PMID 19087263.

    See all (39) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. innexin 1 predominantly localized to the baso-lateral domain of follicle cells.
      Title: Gap junctions in the ovary of Drosophila melanogaster: localization of innexins 1, 2, 3 and 4 and evidence for intercellular communication via innexin-2 containing channels.
    2. Data show that innexins, including shakB and ogre, are not functionally interchangeable in Drosophila during photoreceptor development.
      Title: Gap junction proteins are not interchangeable in development of neural function in the Drosophila visual system.
    3. role of the innexin 2 and ogre genes during gastrointestinal development of the fly embryo
      Title: Gastrointestinal development in the Drosophila embryo requires the activity of innexin gap junction channel proteins.
    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:69639 BioGRID:67757 Pli    BioGRID  PubMed Two-hybrid 
    BioGRID:69639 BioGRID:70919 betaggt-II    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    nervous system development NAS
    Non-traceable Author Statement
    more info
    		  
    phototransduction IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    visual behavior ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    basolateral plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    gap junction IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    gap junction NAS
    Non-traceable Author Statement
    more info
    		  
    integral to membrane NAS
    Non-traceable Author Statement
    more info
    		  
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    		  
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    General protein information

    Preferred Names
    CG3039 gene product from transcript CG3039-RD
    Names
    CG3039-PA
    CG3039-PB
    CG3039-PC
    CG3039-PD
    contrast-blind-8
    innexin 1
    ogre-PA
    ogre-PB
    ogre-PC
    ogre-PD
    optic ganglia-reduced
    optic ganglion reduced
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.3

      Range
      6868067..6885458, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001258629.1 → NP_001245558.1  optic ganglion reduced, isoform D [Drosophila melanogaster]

      Status: REVIEWED

      Conserved Domains (1) summary
      cl03000
      Location:20 – 356
      Blast Score: 835
      Innexin; Innexin

    2. NM_167101.2 → NP_727147.1  optic ganglion reduced, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P27716
      Related
      FBpp0070996
      Conserved Domains (1) summary
      cl03000
      Location:20 – 356
      Blast Score: 835
      Innexin; Innexin

    3. NM_080085.3 → NP_524824.1  optic ganglion reduced, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P27716
      Related
      FBpp0070995
      Conserved Domains (1) summary
      cl03000
      Location:20 – 356
      Blast Score: 835
      Innexin; Innexin

    4. NM_001258628.1 → NP_001245557.1  optic ganglion reduced, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      Conserved Domains (1) summary
      cl03000
      Location:20 – 356
      Blast Score: 835
      Innexin; Innexin
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014298.4 AFH07272.1
    genomic AE014298.4 AAF46225.1
    genomic AE014298.4 AFH07271.1
    mRNA BT004911.1 AAO49164.1
    genomic AE014298.4 AAF46226.1
    mRNA X61180.1 CAA43486.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    S17285.1 GenPept
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    Additional Links

    Gene LinkOut

      Supplemental Content