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    Mmc1_2953 multi-sensor hybrid histidine kinase [ Magnetococcus marinus MC-1 ]

    Gene ID: 4482027, updated on 18-May-2013
    Gene symbol
    Mmc1_2953
    Gene description
    multi-sensor hybrid histidine kinase
    Locus tag
    Mmc1_2953
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Magnetococcus marinus MC-1 (strain: MC-1, old-name: Magnetococcus sp. MC-1)
    Lineage
    Bacteria; Proteobacteria; Alphaproteobacteria; Magnetococcales; Magnetococcaceae; Magnetococcus
    Sequence :
    NC_008576.1 (3662787..3666395, complement)

    NC_008576.1Genomic Context describing neighboring genes Neighboring gene PAS/PAC sensor hybrid histidine kinase Neighboring gene methyl-accepting chemotaxis sensory transducer Neighboring gene hypothetical protein Neighboring gene Hpt sensor hybrid histidine kinase Neighboring gene response regulator receiver protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Magnetococcus marinus gen. nov., sp. nov., a marine, magnetotactic bacterium that represents a novel lineage (Magnetococcaceae fam. nov., Magnetococcales ord. nov.) at the base of the Alphaproteobacteria. Bazylinski DA, et al. Int J Syst Evol Microbiol, 2013 Mar. PMID 22581902.
    2. Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1. Schübbe S, et al. Appl Environ Microbiol, 2009 Jul. PMID 19465526.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    multi-sensor hybrid histidine kinase
    YP_866850.1
    • KEGG: mca:MCA1204 sensory box histidine kinase/response regulator~TIGRFAM: PAS sensor protein~PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein~SMART: PAS domain containing protein; PAC repeat-containing protein

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_008576.1

      Range
      3662787..3666395, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_866850.1 multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0LBV1
      Conserved Domains (10) summary
      cd00082
      Location:539 – 602
      Blast Score: 172
      HisKA; Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via ...
      pfam00072
      Location:935 – 1048
      Blast Score: 305
      Response_reg; Response regulator receiver domain
      pfam08447
      Location:427 – 515
      Blast Score: 245
      PAS_3; PAS fold
      COG0642
      Location:535 – 773
      Blast Score: 441
      BaeS; Signal transduction histidine kinase [Signal transduction mechanisms]
      COG0784
      Location:783 – 913
      Blast Score: 203
      CheY; FOG: CheY-like receiver [Signal transduction mechanisms]
      COG2198
      Location:1109 – 1200
      Blast Score: 115
      ArcB; FOG: HPt domain [Signal transduction mechanisms]
      COG2202
      Location:158 – 395
      Blast Score: 234
      AtoS; FOG: PAS/PAC domain [Signal transduction mechanisms]
      cd00075
      Location:658 – 765
      Blast Score: 231
      HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
      cd00130
      Location:156 – 257
      Blast Score: 159
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      cd00156
      Location:936 – 1053
      Blast Score: 338
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    Nucleotide Protein
    Heading Accession and Version
    genomic CP000471.1 ABK45444.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    ZP_00290782.1 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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