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slc8a3.S solute carrier family 8 (sodium/calcium exchanger), member 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446366, updated on 11-Apr-2024

Summary

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Official Symbol
slc8a3.S
Official Full Name
solute carrier family 8 (sodium/calcium exchanger), member 3 S homeolog
Primary source
Xenbase:XB-GENE-954538
Locus tag
XELAEV_18041062mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ncx3; slc8a2; slc8a3; slc8a3.L
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Genomic context

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Location:
chromosome: 8S
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (4081616..4084447, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (4074252..4077083, complement)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene SPARC related modular calcium binding 1 S homeolog Neighboring gene sodium/calcium exchanger 3-like Neighboring gene desumoylating isopeptidase 2 like S homeolog Neighboring gene synaptojanin 2 binding protein S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83127

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
  
enables calcium:sodium antiporter activity IEA
Inferred from Electronic Annotation
more info
  
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within calcium ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell communication IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sodium ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in postsynapse IEA
Inferred from Electronic Annotation
more info
  
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 8 (sodium/calcium exchanger), member 3 S homeolog
Names
solute carrier family 8 (sodium-calcium exchanger), member 2
solute carrier family 8 (sodium/calcium exchanger), member 3 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093062.1 → NP_001086531.1  solute carrier family 8 (sodium/calcium exchanger), member 3 S homeolog

    See identical proteins and their annotated locations for NP_001086531.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076761
    UniProtKB/TrEMBL
    Q6DFH6
    Conserved Domains (3) summary
    pfam01699
    Location:78 → 249
    Na_Ca_ex; Sodium/calcium exchanger protein
    pfam03160
    Location:394 → 484
    Calx-beta; Calx-beta domain
    pfam16494
    Location:252 → 373
    Na_Ca_ex_C; C-terminal extension of sodium/calcium exchanger domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    4081616..4084447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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