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polr1d polymerase (RNA) I polypeptide D [ Danio rerio (zebrafish) ]

Gene ID: 445412, updated on 31-Jan-2015
Official Symbol
polr1dprovided by ZNC
Official Full Name
polymerase (RNA) I polypeptide Dprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040930-4
See related
Ensembl:ENSDARG00000037570; Vega:OTTDARG00000032489
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
im:7162148; zgc:136449
See polr1d in MapViewer
Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
104 current GRCz10 (GCF_000002035.5) 14 NC_007125.6 (8771293..8779380, complement)
103 previous assembly Zv9 (GCF_000002035.4) 14 NC_007125.5 (9166818..9174889, complement)

Chromosome 14 - NC_007125.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100005318 Neighboring gene synaptobrevin-like 1 Neighboring gene SH2 domain containing 1A duplicate b Neighboring gene Cdc42 guanine nucleotide exchange factor (GEF) 9b

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-directed RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 
contributes_to RNA polymerase I activity IBA
Inferred from Biological aspect of Ancestor
more info
 
contributes_to RNA polymerase III activity IBA
Inferred from Biological aspect of Ancestor
more info
 
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
DNA-directed RNA polymerase I complex IBA
Inferred from Biological aspect of Ancestor
more info
 
DNA-directed RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
DNA-directed RNA polymerases I and III subunit RPAC2
Names
DNA-directed RNA polymerases I and III subunit RPAC2
AC19
DNA-directed RNA polymerase I subunit D
RNA polymerase I polypeptide D
RNA polymerases I and III subunit AC2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003888.1NP_001003888.1  DNA-directed RNA polymerases I and III subunit RPAC2

    See proteins identical to NP_001003888.1

    Status: PROVISIONAL

    Source sequence(s)
    AY648775
    UniProtKB/Swiss-Prot
    Q6DRI4
    Related
    ENSDARP00000054709, OTTDARP00000035918, ENSDART00000054710, OTTDART00000045094
    Conserved Domains (2) summary
    cd07029
    Location:1397
    RNAP_I_III_AC19; AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III
    pfam01193
    Location:2381
    RNA_pol_L; RNA polymerase Rpb3/Rpb11 dimerization domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007125.6 Reference GRCz10 Primary Assembly

    Range
    8771293..8779380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157141.2XP_005157198.1  

    Conserved Domains (2) summary
    pfam01193
    Location:2344
    RNA_pol_L; RNA polymerase Rpb3/Rpb11 dimerization domain
    cl11409
    Location:1345
    RNAP_RPB11_RPB3; RPB11 and RPB3 subunits of RNA polymerase