zgc:92429 zgc:92429 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:92429provided by ZNC
Official Full Name: zgc:92429provided by ZNC
Primary source: ZFIN:ZDB-GENE-040801-194
See related: Ensembl:ENSDARG00000030176 AllianceGenome:ZFIN:ZDB-GENE-040801-194
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: id:ibd3446
Summary: Predicted to enable zinc ion binding activity. Predicted to be involved in centrosome duplication. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Orthologous to human ITGB1BP2 (integrin subunit beta 1 binding protein 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (23727690..23745990, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (23456611..23474789, complement)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in centrosome duplication	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: uncharacterized protein LOC445063

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001003457.1 → NP_001003457.1 uncharacterized protein LOC445063

See identical proteins and their annotated locations for NP_001003457.1

Status: PREDICTED

Source sequence(s)

BC078394

UniProtKB/TrEMBL

A0A8M1N1E1, Q6DBR7

Related

ENSDARP00000048049.5, ENSDART00000048050.8

Conserved Domains (2) summary

cd06488
Location:227 → 313

p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...

pfam04968
Location:3 → 64

CHORD; CHORD