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    ASS1 argininosuccinate synthase 1 [ Homo sapiens ]

    Gene ID: 445, updated on 19-Feb-2012

    Summary

    Official Symbol
    ASS1provided by HGNC
    Official Full Name
    argininosuccinate synthase 1provided by HGNC
    Primary source
    HGNC:758
    Locus tag
    RP11-618A20.2
    See related
    Ensembl:ENSG00000130707; HPRD:04590; MIM:603470; Vega:OTTHUMG00000020806
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ASS; CTLN1
    Summary
    The protein encoded by this gene catalyzes the penultimate step of the arginine biosynthetic pathway. There are approximately 10 to 14 copies of this gene including the pseudogenes scattered across the human genome, among which the one located on chromosome 9 appears to be the only functional gene for argininosuccinate synthetase. Mutations in the chromosome 9 copy of ASS cause citrullinemia. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    9q34.1
    Sequence :
    Chromosome: 9; NC_000009.11 (133320094..133376661)
    See ASS1 in Epigenomics, MapViewer

    Chromosome 9 - NC_000009.11Genomic Context describing neighboring genes Neighboring gene hemicentin-2-like Neighboring gene hemicentin 2 Neighboring gene uncharacterized LOC100272217 Neighboring gene far upstream element (FUSE) binding protein 3

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Citrullinemia

    Summary from GeneReviews Go to GeneReview

    Disease Characteristics
    Citrullinemia type I (CTLN1) presents as a clinical spectrum that includes an acute neonatal form (the "classic" form), a milder late-onset form, a form without symptoms or hyperammonemia, and a form in which women have onset of severe symptoms during pregnancy or post partum. Distinction between the clinical forms is based on clinical findings and is not clear-cut. Infants with the acute neonatal form appear normal at birth. Shortly thereafter, they develop hyperammonemia and become progressively lethargic, feed poorly, often vomit, and may develop signs of increased intracranial pressure (ICP). Without prompt intervention, hyperammonemia and the accumulation of other toxic metabolites (e.g., glutamine) result in ICP, increased neuromuscular tone, spasticity, ankle clonus, seizures, loss of consciousness, and death. Children with the severe form who are treated promptly may survive for an indeterminate period of time, but usually with significant neurologic deficits. The late-onset form may be milder than that seen in the acute neonatal form, for unknown reasons. The episodes of hyperammonemia are similar to those seen in the acute neonatal form, but the initial neurologic findings may be more subtle because of the older age of the affected individuals.
    Diagnosis Testing
    Citrullinemia type I results from deficiency of the enzyme argininosuccinate synthase (ASS), the third step in the urea cycle, in which citrulline is condensed with aspartate to form argininosuccinic acid. Untreated individuals with the severe form of citrullinemia type I have hyperammonemia (plasma ammonia concentration 1000-3000 micromol/L). Plasma quantitative amino acid analysis shows absence of argininosuccinic acid and concentration of citrulline usually greater than 1000 micromol/L (normal: <50 micromol/L). Argininosuccinate synthase enzyme activity, measured in fibroblasts, liver, and in all tissues in which ASS is expressed, is decreased. Molecular genetic testing of ASS1, the only gene in which mutation is known to cause citrullinemia type I, is clinically available.
    Genetic Counseling
    Citrullinemia type I is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal diagnosis for pregnancies at increased risk are possible if the disease-causing mutations in the family are known.
    References

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_000041.2 NP_001645.1 ARAF    BIND  PubMed A-RAF interacts with ASS. 
    NP_000041.2 NP_001645.1 ARAF    BIND  PubMed A-Raf interacts with ASS. 
    P00966 Q9H8T0 AKTIP    HPRD  PubMed  
    P00966 P10398 ARAF    HPRD  PubMed  
    P00966 Q9H1I8 ASCC2    HPRD  PubMed  
    P00966 P00966 ASS1    HPRD  PubMed  
    P00966 P15502 ELN    HPRD  PubMed  
    BioGRID:106937 BioGRID:223223 AI837181    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:106937 BioGRID:122157 AKTIP    BioGRID  PubMed Two-hybrid 
    BioGRID:106937 BioGRID:106864 ARAF    BioGRID  PubMed Two-hybrid 
    BioGRID:106937 BioGRID:123921 ASCC2    BioGRID  PubMed Two-hybrid 
    BioGRID:106937 BioGRID:106937 ASS1    BioGRID  PubMed Two-hybrid 
    BioGRID:106937 BioGRID:110694 MYC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:106937 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    argininosuccinate synthase activity EXP
    Inferred from Experiment
    more info
     
    argininosuccinate synthase activity IEA
    Inferred from Electronic Annotation
    more info
     
    ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    toxin binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acute-phase response IEA
    Inferred from Electronic Annotation
    more info
     
    aging IEA
    Inferred from Electronic Annotation
    more info
     
    arginine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    argininosuccinate metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    cellular amino acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    cellular nitrogen compound metabolic process TAS
    Traceable Author Statement
    more info
     
    cellular response to amino acid stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to ammonium ion IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to cAMP IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to dexamethasone stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to glucagon stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to interferon-gamma IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to lipopolysaccharide IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to oleic acid IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to tumor necrosis factor IEA
    Inferred from Electronic Annotation
    more info
     
    diaphragm development IEA
    Inferred from Electronic Annotation
    more info
     
    kidney development IEA
    Inferred from Electronic Annotation
    more info
     
    liver development IEA
    Inferred from Electronic Annotation
    more info
     
    midgut development IEA
    Inferred from Electronic Annotation
    more info
     
    response to biotic stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    response to drug IEA
    Inferred from Electronic Annotation
    more info
     
    response to estradiol stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    response to fatty acid IEA
    Inferred from Electronic Annotation
    more info
     
    response to glucocorticoid stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    response to growth hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    response to mycotoxin IEA
    Inferred from Electronic Annotation
    more info
     
    response to nutrient IEA
    Inferred from Electronic Annotation
    more info
     
    response to steroid hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    response to zinc ion IEA
    Inferred from Electronic Annotation
    more info
     
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    urea cycle TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    cell body fiber IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol TAS
    Traceable Author Statement
    more info
     
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    lysosome IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    perikaryon IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    argininosuccinate synthase
    Names
    argininosuccinate synthase
    citrulline-aspartate ligase
    citrulline--aspartate ligase
    argininosuccinate synthetase 1
    NP_000041.2
    NP_446464.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_011542.1 RefSeqGene

      Range
      5001..61568
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000050.4NP_000041.2  argininosuccinate synthase

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer variant.
      Source sequence(s)
      AL354898, BC013224, DB496935
      Consensus CDS
      CCDS6933.1
      UniProtKB/Swiss-Prot
      P00966
      UniProtKB/TrEMBL
      Q5T6L4
      Related
      ENSP00000361470, ENST00000334909
      Conserved Domains (2) summary
      cd01999
      Location:7398
      Blast Score: 1452
      Argininosuccinate_Synthase; Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In ...
      COG0137
      Location:1408
      Blast Score: 1307
      ArgG; Argininosuccinate synthase [Amino acid transport and metabolism]
    2. NM_054012.3NP_446464.1  argininosuccinate synthase

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an exon in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      BC013224, DB496935
      Consensus CDS
      CCDS6933.1
      UniProtKB/Swiss-Prot
      P00966
      UniProtKB/TrEMBL
      Q5T6L4
      Related
      ENSP00000253004, OTTHUMP00000022362, ENST00000352480, OTTHUMT00000054650
      Conserved Domains (2) summary
      cd01999
      Location:7398
      Blast Score: 1452
      Argininosuccinate_Synthase; Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In ...
      COG0137
      Location:1408
      Blast Score: 1307
      ArgG; Argininosuccinate synthase [Amino acid transport and metabolism]

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000009.11 Reference GRCh37.p5 Primary Assembly

      Range
      133320094..133376661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000141.1 Alternate HuRef

      Range
      102805927..102862325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)