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    MSH2 mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) [ Homo sapiens (human) ]

    Gene ID: 4436, updated on 15-Jun-2013
    Official Symbol
    MSH2provided by HGNC
    Official Full Name
    mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)provided by HGNC
    Primary source
    HGNC:7325
    See related
    Ensembl:ENSG00000095002; HPRD:00389; MIM:609309; Vega:OTTHUMG00000128861
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FCC1; COCA1; HNPCC; LCFS2; HNPCC1
    Summary
    This locus is frequently mutated in hereditary nonpolyposis colon cancer (HNPCC). When cloned, it was discovered to be a human homolog of the E. coli mismatch repair gene mutS, consistent with the characteristic alterations in microsatellite sequences (RER+ phenotype) found in HNPCC. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]
    Location :
    2p21
    Sequence :
    Chromosome: 2; NC_000002.11 (47630206..47710367)
    See MSH2 in Epigenomics, MapViewer

    Chromosome 2 - NC_000002.11Genomic Context describing neighboring genes Neighboring gene brain cytoplasmic RNA 1 Neighboring gene epithelial cell adhesion molecule Neighboring gene microRNA 559 Neighboring gene hCG2040054 Neighboring gene potassium channel, subfamily K, member 12 Neighboring gene ribosomal protein L18a pseudogene 6

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Lynch syndrome I

    Summary from GeneReviews: Lynch Syndrome Go to GeneReviews

    Disease Characteristics
    Lynch syndrome, caused by a germline mutation in a mismatch repair gene and associated with tumors exhibiting microsatellite instability (MSI), is characterized by an increased risk of colon cancer and cancers of the endometrium, ovary, stomach, small intestine, hepatobiliary tract, urinary tract, brain, and skin. In individuals with Lynch syndrome the following life time risks for cancer are seen: 52%-82% for colorectal cancer (mean age at diagnosis 44-61 years); 25%-60% for endometrial cancer in women (mean age at diagnosis 48-62 years); 6% to 13% for gastric cancer (mean age at diagnosis 56 years); and 4%-12% for ovarian cancer (mean age at diagnosis 42.5 years; approximately 30% are diagnosed before age 40 years). The risk for other Lynch syndrome-related cancers is lower, though substantially increased over general population rates.
    Diagnosis Testing
    The diagnosis of Lynch syndrome can be made on the basis of family history in those families meeting the Amsterdam criteria who have tumor microsatellite instability (MSI) or on the basis of molecular genetic testing in an individual or family with a germline mutation in one of four mismatch repair (MMR) genes (MLH1, MSH2, MSH6, and PMS2). MLH1 and MSH2 germline mutations account for approximately 90% of mutations in families with Lynch syndrome; MSH6 mutations in about 7%-10%; and PMS2 mutations in fewer than 5%. Germline deletions in EPCAM (not a mismatch repair gene) inactivate MSH2 in about 1% of individuals with Lynch syndrome. Genetic testing for Lynch syndrome is ideally performed in a stepwise manner: 1. Evaluation of tumor tissue for MSI through molecular MSI testing and/or immunohistochemistry (IHC) of the four MMR proteins. The presence of MSI in the tumor alone is not sufficient to diagnosis Lynch syndrome because 10%-15% of sporadic colorectal cancers exhibit MSI. IHC testing helps identify the MMR gene that most likely harbors a germline mutation. 2. Molecular genetic testing of the tumor for methylation and somatic BRAF mutations to help identify those tumors more likely to be sporadic than hereditary. 3. Molecular genetic testing of the MMR genes to identify a germline mutation when findings are consistent with Lynch syndrome.
    Genetic Counseling
    Lynch syndrome is inherited in an autosomal dominant manner. The majority of individuals diagnosed with Lynch syndrome have inherited the condition from a parent. However, because of incomplete penetrance, variable age of cancer development, cancer risk reduction as a result of screening or prophylactic surgery, or early death, not all individuals with a mutation in one of the genes associated with Lynch syndrome have a parent who had cancer. Each child of an individual with Lynch syndrome has a 50% chance of inheriting the mutation. Prenatal diagnosis for pregnancies at increased risk is possible if the disease-causing mutation in the family is known. Requests for prenatal testing for typically adult-onset conditions which (like Lynch syndrome) have treatment available are not common.
    References

    Muir-Torr syndrome

    Summary from GeneReviews: Lynch Syndrome Go to GeneReviews

    Disease Characteristics
    Lynch syndrome, caused by a germline mutation in a mismatch repair gene and associated with tumors exhibiting microsatellite instability (MSI), is characterized by an increased risk of colon cancer and cancers of the endometrium, ovary, stomach, small intestine, hepatobiliary tract, urinary tract, brain, and skin. In individuals with Lynch syndrome the following life time risks for cancer are seen: 52%-82% for colorectal cancer (mean age at diagnosis 44-61 years); 25%-60% for endometrial cancer in women (mean age at diagnosis 48-62 years); 6% to 13% for gastric cancer (mean age at diagnosis 56 years); and 4%-12% for ovarian cancer (mean age at diagnosis 42.5 years; approximately 30% are diagnosed before age 40 years). The risk for other Lynch syndrome-related cancers is lower, though substantially increased over general population rates.
    Diagnosis Testing
    The diagnosis of Lynch syndrome can be made on the basis of family history in those families meeting the Amsterdam criteria who have tumor microsatellite instability (MSI) or on the basis of molecular genetic testing in an individual or family with a germline mutation in one of four mismatch repair (MMR) genes (MLH1, MSH2, MSH6, and PMS2). MLH1 and MSH2 germline mutations account for approximately 90% of mutations in families with Lynch syndrome; MSH6 mutations in about 7%-10%; and PMS2 mutations in fewer than 5%. Germline deletions in EPCAM (not a mismatch repair gene) inactivate MSH2 in about 1% of individuals with Lynch syndrome. Genetic testing for Lynch syndrome is ideally performed in a stepwise manner: 1. Evaluation of tumor tissue for MSI through molecular MSI testing and/or immunohistochemistry (IHC) of the four MMR proteins. The presence of MSI in the tumor alone is not sufficient to diagnosis Lynch syndrome because 10%-15% of sporadic colorectal cancers exhibit MSI. IHC testing helps identify the MMR gene that most likely harbors a germline mutation. 2. Molecular genetic testing of the tumor for methylation and somatic BRAF mutations to help identify those tumors more likely to be sporadic than hereditary. 3. Molecular genetic testing of the MMR genes to identify a germline mutation when findings are consistent with Lynch syndrome.
    Genetic Counseling
    Lynch syndrome is inherited in an autosomal dominant manner. The majority of individuals diagnosed with Lynch syndrome have inherited the condition from a parent. However, because of incomplete penetrance, variable age of cancer development, cancer risk reduction as a result of screening or prophylactic surgery, or early death, not all individuals with a mutation in one of the genes associated with Lynch syndrome have a parent who had cancer. Each child of an individual with Lynch syndrome has a 50% chance of inheriting the mutation. Prenatal diagnosis for pregnancies at increased risk is possible if the disease-causing mutation in the family is known. Requests for prenatal testing for typically adult-onset conditions which (like Lynch syndrome) have treatment available are not common.
    References

    Turcot syndrome

    Summary from GeneReviews: Lynch Syndrome Go to GeneReviews

    Disease Characteristics
    Lynch syndrome, caused by a germline mutation in a mismatch repair gene and associated with tumors exhibiting microsatellite instability (MSI), is characterized by an increased risk of colon cancer and cancers of the endometrium, ovary, stomach, small intestine, hepatobiliary tract, urinary tract, brain, and skin. In individuals with Lynch syndrome the following life time risks for cancer are seen: 52%-82% for colorectal cancer (mean age at diagnosis 44-61 years); 25%-60% for endometrial cancer in women (mean age at diagnosis 48-62 years); 6% to 13% for gastric cancer (mean age at diagnosis 56 years); and 4%-12% for ovarian cancer (mean age at diagnosis 42.5 years; approximately 30% are diagnosed before age 40 years). The risk for other Lynch syndrome-related cancers is lower, though substantially increased over general population rates.
    Diagnosis Testing
    The diagnosis of Lynch syndrome can be made on the basis of family history in those families meeting the Amsterdam criteria who have tumor microsatellite instability (MSI) or on the basis of molecular genetic testing in an individual or family with a germline mutation in one of four mismatch repair (MMR) genes (MLH1, MSH2, MSH6, and PMS2). MLH1 and MSH2 germline mutations account for approximately 90% of mutations in families with Lynch syndrome; MSH6 mutations in about 7%-10%; and PMS2 mutations in fewer than 5%. Germline deletions in EPCAM (not a mismatch repair gene) inactivate MSH2 in about 1% of individuals with Lynch syndrome. Genetic testing for Lynch syndrome is ideally performed in a stepwise manner: 1. Evaluation of tumor tissue for MSI through molecular MSI testing and/or immunohistochemistry (IHC) of the four MMR proteins. The presence of MSI in the tumor alone is not sufficient to diagnosis Lynch syndrome because 10%-15% of sporadic colorectal cancers exhibit MSI. IHC testing helps identify the MMR gene that most likely harbors a germline mutation. 2. Molecular genetic testing of the tumor for methylation and somatic BRAF mutations to help identify those tumors more likely to be sporadic than hereditary. 3. Molecular genetic testing of the MMR genes to identify a germline mutation when findings are consistent with Lynch syndrome.
    Genetic Counseling
    Lynch syndrome is inherited in an autosomal dominant manner. The majority of individuals diagnosed with Lynch syndrome have inherited the condition from a parent. However, because of incomplete penetrance, variable age of cancer development, cancer risk reduction as a result of screening or prophylactic surgery, or early death, not all individuals with a mutation in one of the genes associated with Lynch syndrome have a parent who had cancer. Each child of an individual with Lynch syndrome has a 50% chance of inheriting the mutation. Prenatal diagnosis for pregnancies at increased risk is possible if the disease-causing mutation in the family is known. Requests for prenatal testing for typically adult-onset conditions which (like Lynch syndrome) have treatment available are not common.
    References
    Protein Gene Interaction Pubs
    pol gag-pol HIV-1 PR is identified to have a physical interaction with mutS homolog 2, colon cancer, nonpolyposis type 1 (MSH2) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    NC_000002.9 NP_005216.1 E2F1    BIND  PubMed The 5'MSH2 promoter region interacts with E2F1. 
    NC_000002.9 NP_005216.1 E2F1    BIND  PubMed E2F1 interacts with the MSH2 promoter. 
    NC_000002.9 NP_001940.1 E2F3    BIND  PubMed E2F3 interacts with the MSH2 promoter. 
    NC_000002.9 NP_001941.2 E2F4    BIND  PubMed E2F4 interacts with the MSH2 promoter. 
    NP_000242.1 NP_009227.1 BRCA1    BIND  PubMed BRCA1 interacts with MSH2 in the absence of ADP-MSH2 interaction. 
    NP_000242.1 NP_003677.3 EXO1    BIND  PubMed The exonuclease HEX1 interacts with the mismatch repair protein hMSH2. 
    NP_000242.1 NP_006018.3 EXO1    BIND  PubMed The exonuclease hEXO1b interacts with the mismatch repair protein hMSH2. 
    NP_000242.1 NP_002373.3 MAX    BIND  PubMed Max interacts with MSH2. This is a modeled interaction between Max from an unspecified source and human MSH2. 
    NP_000242.1 NP_002430.1 MSH3    BIND  PubMed MSH2/HNPCC interacts with MSH3 
    NP_000242.1 NP_000170.1 MSH6    BIND  PubMed MSH2 interacts with MSH6. 
    NP_000242.1 NP_000170.1 MSH6    BIND  PubMed MSH2 interacts with MSH6. 
    P43246 Q13535 ATR    HPRD  PubMed  
    P43246 Q8WXE1 ATRIP    HPRD  PubMed  
    P43246 Q99728 BARD1    HPRD  PubMed  
    P43246 O96017 CHEK2    HPRD  PubMed  
    P43246 Q92793 CREBBP    HPRD  PubMed  
    P43246 Q9UQ84 EXO1    HPRD  PubMed  
    P43246 P61244 MAX    HPRD  PubMed  
    P43246 P20585 MSH3    HPRD  PubMed  
    P43246 P52701 MSH6    HPRD  PubMed  
    P43246 P12004 PCNA    HPRD  PubMed  
    P43246 Q14683 SMC1A    HPRD  PubMed  
    BioGRID:110573 BioGRID:106823 AIRE    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:106807 ANXA7    BioGRID  PubMed Two-hybrid 
    BioGRID:110573 BioGRID:106962 ATM    BioGRID  PubMed Co-purification 
    BioGRID:110573 BioGRID:107009 ATP6V1B2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:107027 ATR    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-localization; Reconstituted Complex 
    BioGRID:110573 BioGRID:313463 ATRIP    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:107056 BARD1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110573 BioGRID:107110 BLM    BioGRID  PubMed Affinity Capture-Western; Co-purification 
    BioGRID:110573 BioGRID:107140 BRCA1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-purification; Reconstituted Complex; Two-hybrid 
    BioGRID:110573 BioGRID:107452 CDK2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:107459 CDK9    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:107460 CDKN1A    BioGRID  PubMed Two-hybrid 
    BioGRID:110573 BioGRID:107536 CHEK1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:116369 CHEK2    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:110573 BioGRID:107777 CREBBP    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:114031 CUL2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:108143 DPYSL3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:119582 DTL    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:108379 ERCC1    BioGRID  PubMed Affinity Capture-Western; Co-fractionation 
    BioGRID:110573 BioGRID:108384 ERCC4    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:108403 ESR1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:110573 BioGRID:108404 ESR2    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:110573 BioGRID:114602 EXO1    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:110573 BioGRID:108472 FANCA    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:108474 FANCD2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:109143 GRB7    BioGRID  PubMed Two-hybrid 
    BioGRID:110573 BioGRID:109425 HNRNPD    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:109596 HUS1    BioGRID  PubMed Affinity Capture-Western; Far Western 
    BioGRID:110573 BioGRID:109766 IK    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:109931 JUP    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:108918 KAT2A    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:110319 MAX    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:110573 BioGRID:110411 MGMT    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:110438 MLH1    BioGRID  PubMed Affinity Capture-Western; Co-purification 
    BioGRID:110573 BioGRID:110501 MRE11A    BioGRID  PubMed Co-purification 
    BioGRID:110573 BioGRID:110573 MSH2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110573 BioGRID:110574 MSH3    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-fractionation; Reconstituted Complex 
    BioGRID:110573 BioGRID:109211 MSH6    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-fractionation; Co-purification; Reconstituted Complex 
    BioGRID:110573 BioGRID:110681 MUTYH    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:110573 BioGRID:110694 MYC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:110573 BioGRID:110763 NBN    BioGRID  PubMed Co-purification 
    BioGRID:110573 BioGRID:110815 NEDD8    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:117421 NELFB    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:110954 NRD1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:120751 OTUB1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:111142 PCNA    BioGRID  PubMed Affinity Capture-MS; Far Western 
    BioGRID:110573 BioGRID:111165 PDE3A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:111391 PMS1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:111404 PMS2    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:110573 BioGRID:111576 PRKCZ    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:116327 PTP4A3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:111771 RAD1    BioGRID  PubMed Affinity Capture-Western; Far Western 
    BioGRID:110573 BioGRID:111822 RAD21    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:115417 RAD50    BioGRID  PubMed Co-purification 
    BioGRID:110573 BioGRID:111825 RAD51    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:111820 RAD9A    BioGRID  PubMed Affinity Capture-Western; Far Western 
    BioGRID:110573 BioGRID:121843 RBM25    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:111913 RFC1    BioGRID  PubMed Co-purification 
    BioGRID:110573 BioGRID:118975 RPA4    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110573 BioGRID:116283 RPP14    BioGRID  PubMed Two-hybrid 
    BioGRID:110573 BioGRID:112143 RPS24    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:114546 SART1    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:115747 SEC23A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:116015 SEPT9    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:119602 SIRT7    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:124097 SLX4    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Two-hybrid 
    BioGRID:110573 BioGRID:114045 SMARCA5    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:121244 SMARCAD1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:112490 SMN1    BioGRID  PubMed Two-hybrid 
    BioGRID:110573 BioGRID:116597 SNW1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:115990 SRSF10    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:114709 SRSF11    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:112328 SRSF5    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:112330 SRSF7    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:112644 ST13    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:112651 STAT3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:112497 SUMO2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:116367 SUPT16H    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:112697 SUPT5H    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:112938 TK1    BioGRID  PubMed Two-hybrid 
    BioGRID:110573 BioGRID:113008 TOP2B    BioGRID  PubMed Co-fractionation 
    BioGRID:110573 BioGRID:113010 TP53    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:110573 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:110573 BioGRID:115791 UBD    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:113344 XPA    BioGRID  PubMed Reconstituted Complex 
    BioGRID:110573 BioGRID:113353 XRCC5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:110573 BioGRID:108822 XRCC6    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:110573 BioGRID:1205538 gag-pol    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    contributes_to ADP binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    contributes_to ATP binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    contributes_to ATPase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA-dependent ATPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    contributes_to MutLalpha complex binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Y-form DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    centromeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    contributes_to dinucleotide insertion or deletion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    contributes_to dinucleotide repeat insertion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    double-strand/single-strand DNA junction binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    contributes_to double-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enzyme binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    contributes_to four-way junction DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    contributes_to guanine/thymine mispair binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    guanine/thymine mispair binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    loop DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    contributes_to magnesium ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    contributes_to mismatched DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    contributes_to oxidized purine DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein C-terminus binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    contributes_to protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    contributes_to single guanine insertion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    contributes_to single thymine insertion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    contributes_to single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    ATP catabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    B cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    B cell mediated immunity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    DNA repair IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cell cycle arrest IEA
    Inferred from Electronic Annotation
    more info
     
    determination of adult lifespan IEA
    Inferred from Electronic Annotation
    more info
     
    double-strand break repair IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    germ cell development IEA
    Inferred from Electronic Annotation
    more info
     
    in utero embryonic development IEA
    Inferred from Electronic Annotation
    more info
     
    intra-S DNA damage checkpoint IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    isotype switching IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    isotype switching ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    maintenance of DNA repeat elements IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    male gonad development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    meiotic gene conversion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    meiotic mismatch repair IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    mismatch repair IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of DNA recombination IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of DNA recombination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    negative regulation of neuron apoptotic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    negative regulation of reciprocal meiotic recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    oxidative phosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of helicase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    postreplication repair IDA
    Inferred from Direct Assay
    more info
    PubMed 
    response to UV-B IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    response to UV-B ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    response to X-ray IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    response to X-ray ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    somatic hypermutation of immunoglobulin genes IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    somatic recombination of immunoglobulin gene segments ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    MutSalpha complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    MutSbeta complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nuclear chromosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Preferred Names
    DNA mismatch repair protein Msh2
    Names
    DNA mismatch repair protein Msh2
    hMSH2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007110.2 RefSeqGene

      Range
      4944..85105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_218

    mRNA and Protein(s)

    1. NM_000251.2NP_000242.1  DNA mismatch repair protein Msh2 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK304496, CB250419, DC342099, U04045
      Consensus CDS
      CCDS1834.1
      UniProtKB/Swiss-Prot
      P43246
      Related
      ENSP00000233146, OTTHUMP00000159084, ENST00000233146, OTTHUMT00000250805
      Conserved Domains (5) summary
      COG0249
      Location:19853
      Blast Score: 1332
      MutS; Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
      cd03285
      Location:633852
      Blast Score: 1031
      ABC_MSH2_euk; MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal ...
      pfam01624
      Location:18132
      Blast Score: 278
      MutS_I; MutS domain I
      pfam05188
      Location:158284
      Blast Score: 214
      MutS_II; MutS domain II
      pfam05190
      Location:473559
      Blast Score: 184
      MutS_IV; MutS family domain IV
    2. NM_001258281.1NP_001245210.1  DNA mismatch repair protein Msh2 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an alternate segment of the first exon, including the translation start site, compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AK304496, CB250419, DC342099
      Consensus CDS
      CCDS58709.1
      UniProtKB/Swiss-Prot
      P43246
      Related
      ENSP00000442697, ENST00000543555
      Conserved Domains (5) summary
      cd03285
      Location:567786
      Blast Score: 1031
      ABC_MSH2_euk; MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal ...
      smart00533
      Location:257579
      Blast Score: 735
      MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
      pfam01624
      Location:566
      Blast Score: 122
      MutS_I; MutS domain I
      pfam05188
      Location:92218
      Blast Score: 214
      MutS_II; MutS domain II
      pfam05190
      Location:407493
      Blast Score: 183
      MutS_IV; MutS family domain IV

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000002.11 Reference GRCh37.p10 Primary Assembly

      Range
      47630206..47710367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000134.1 Alternate HuRef

      Range
      47367170..47445840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018913.1 Alternate CHM1_1.0

      Range
      47497311..47577831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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