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oxct1a 3-oxoacid CoA transferase 1a [ Danio rerio (zebrafish) ]

Gene ID: 442923, updated on 11-Jul-2015
Official Symbol
oxct1aprovided by ZNC
Official Full Name
3-oxoacid CoA transferase 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040723-3
See related
Ensembl:ENSDARG00000013063; Vega:OTTDARG00000020374
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
oxct1; zgc:92003; wu:fj36f06; wu:fj48g08
Orthologs
See oxct1a in MapViewer
Location:
chromosome: 8
Exon count:
17
Annotation release Status Assembly Chr Location
104 current GRCz10 (GCF_000002035.5) 8 NC_007119.6 (31708072..31809229)
103 previous assembly Zv9 (GCF_000002035.4) 8 NC_007119.5 (32565346..32666503)

Chromosome 8 - NC_007119.6Genomic Context describing neighboring genes Neighboring gene F-box protein 4 Neighboring gene si:dkey-46a10.3 Neighboring gene phosphatidylinositol-specific phospholipase C, X domain containing 3 Neighboring gene complement component 7a

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
3-oxoacid CoA-transferase activity IEA
Inferred from Electronic Annotation
more info
 
CoA-transferase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
ketone body catabolic process IEA
Inferred from Electronic Annotation
more info
 
metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
mitochondrion IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
Names
3-oxoacid CoA transferase 1
SAGm18B
sagm18c
scot
NP_001007292.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007291.1NP_001007292.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial

    See identical proteins and their annotated locations for NP_001007292.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078408
    UniProtKB/TrEMBL
    Q6AZB2
    Related
    ENSDARP00000002234, OTTDARP00000020937, ENSDART00000013434, OTTDART00000025446
    Conserved Domains (3) summary
    COG1788
    Location:55277
    AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]
    COG4670
    Location:55524
    YdiF; Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid transport and metabolism]
    cl00339
    Location:308515
    SugarP_isomerase; SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007119.6 Reference GRCz10 Primary Assembly

    Range
    31708072..31809229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)