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    rocD ornithine--oxo-acid transaminase [ Rhizobium leguminosarum bv. viciae 3841 ]

    Gene ID: 4401302, updated on 18-May-2013
    Gene symbol
    rocD
    Gene description
    ornithine--oxo-acid transaminase
    Locus tag
    RL4385
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Rhizobium leguminosarum bv. viciae 3841 (strain: 3841, biovar: viciae 3841)
    Lineage
    Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium
    Location :
    country: United Kingdom
    Sequence :
    NC_008380.1 (4662230..4663429)

    NC_008380.1Genomic Context describing neighboring genes Neighboring gene AsnC family transcriptional regulator Neighboring gene arginase Neighboring gene chemotaxis protein Neighboring gene methyl-accepting chemotaxis protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. The genome of Rhizobium leguminosarum has recognizable core and accessory components. Young JP, et al. Genome Biol, 2006. PMID 16640791.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction

    Miscellaneous features

    • Loc: 4662266-4663426 Pfam match to entry PF00202.8 Aminotran_3 inference = protein motif:Pfam:PF00202.8
    Names
    ornithine--oxo-acid transaminase
    YP_769956.1

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_008380.1

      Range
      4662230..4663429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_769956.1 ornithine--oxo-acid transaminase [Rhizobium leguminosarum bv. viciae 3841]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1MB13
      Conserved Domains (2) summary
      cd00610
      Location:7 – 398
      Blast Score: 1072
      OAT_like; Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, ...
      PRK00854
      Location:1 – 399
      Blast Score: 2000
      rocD; ornithine--oxo-acid transaminase; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    genomic AM236080.1 CAK09872.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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