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LOC4350733 disease resistance protein RPM1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350733, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4350733
Gene description
disease resistance protein RPM1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
A320-103
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
chromosome: 11
Exon count:
1
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (20859369..20862709, complement)

Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene receptor-like protein EIX1 Neighboring gene small nucleolar RNA Z247 Neighboring gene uncharacterized LOC107276845 Neighboring gene uncharacterized LOC112936918

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
disease resistance protein RPM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

    Range
    20859369..20862709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026021453.1 → XP_025877238.1  disease resistance protein RPM1

    UniProtKB/TrEMBL
    B8BL33, B9GB78
    Conserved Domains (4) summary
    COG4886
    Location:533 → 707
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:599 → 619
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00931
    Location:194 → 434
    NB-ARC; NB-ARC domain
    pfam18052
    Location:21 → 102
    Rx_N; Rx N-terminal domain
Nucleotide Protein
Heading Accession and Version

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