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LOC4347637 heat stress transcription factor B-2c-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347637, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4347637
Gene description
heat stress transcription factor B-2c-like
Locus tag
OSNPB_090526600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
HSF24; HSFB2C; OsHsf-24; OJ1439_F07.16-1; OJ1439_F07.16-2
Expression
Broad expression in mature seeds (RPKM 8.2), roots after flowering (RPKM 2.4) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20591220..20595348, complement)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein ROC6-like Neighboring gene BON1-associated protein 2 Neighboring gene UDP-glucose 4-epimerase 3-like Neighboring gene uncharacterized LOC4347639

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat stress transcription factor B-2c
Names
Heat stress transcription factor 24
LOC_Os09g35790
putative heat shock factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422868.1 → NP_001409797.1  heat stress transcription factor B-2c isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK105409, CI311096

  2. NM_001422869.1 → NP_001409798.1  heat stress transcription factor B-2c isoform 2

    Status: VALIDATED

    Source sequence(s)
    AP014965

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    20591220..20595348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757040.2 → XP_015612526.1  heat stress transcription factor B-2c isoform X3

    UniProtKB/Swiss-Prot
    A0A0P0XPY4, Q652A9, Q652B0
    UniProtKB/TrEMBL
    A2Z3A9
    Conserved Domains (2) summary
    smart00415
    Location:36 → 128
    HSF; heat shock factor
    cl21462
    Location:217 → 244
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_026020361.1 → XP_025876146.1  heat stress transcription factor B-2c isoform X2

    Conserved Domains (2) summary
    smart00415
    Location:36 → 128
    HSF; heat shock factor
    cl21462
    Location:217 → 244
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  3. XM_026020360.1 → XP_025876145.1  heat stress transcription factor B-2c isoform X1

    UniProtKB/TrEMBL
    A2Z3A9
    Conserved Domains (2) summary
    smart00415
    Location:36 → 128
    HSF; heat shock factor
    cl21462
    Location:217 → 244
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  4. XM_026020363.1 → XP_025876148.1  heat stress transcription factor B-2c isoform X6

    UniProtKB/TrEMBL
    A0A0P0XPJ6
    Conserved Domains (2) summary
    cl12113
    Location:6 → 29
    HSF_DNA-bind; HSF-type DNA-binding
    cl21462
    Location:118 → 145
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  5. XM_015757041.2 → XP_015612527.1  heat stress transcription factor B-2c isoform X4

    UniProtKB/TrEMBL
    A2Z3A9
    Conserved Domains (2) summary
    smart00415
    Location:36 → 128
    HSF; heat shock factor
    cl21462
    Location:217 → 244
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  6. XM_026020362.1 → XP_025876147.1  heat stress transcription factor B-2c isoform X5

    Conserved Domains (2) summary
    smart00415
    Location:36 → 128
    HSF; heat shock factor
    cl21462
    Location:217 → 244
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q652B0.1 GenPept UniProtKB/Swiss-Prot:Q652B0

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