U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4346401 F-box protein At1g47056 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346401, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC4346401
Gene description
F-box protein At1g47056
Locus tag
OSNPB_090113000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1134_E08.12
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (1054315..1056302)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346396 Neighboring gene protein DCL homolog, chloroplastic Neighboring gene uncharacterized LOC112936470 Neighboring gene uncharacterized LOC107278811

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
F-box protein At1g47056
Names
Os09g0113000
P0646B04.51
putative Avr9/Cf-9 rapidly elicited protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    1054315..1056302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757115.2 → XP_015612601.1  F-box protein At1g47056

    UniProtKB/TrEMBL
    Q6YUN4
    Conserved Domains (3) summary
    cd09293
    Location:309 → 430
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:242 → 266
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:51 → 80
    F-box-like; F-box-like
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases