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LOC4346344 ABC transporter B family member 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346344, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4346344
Gene description
ABC transporter B family member 1
Locus tag
OSNPB_080564300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
mdr14
Expression
Broad expression in flowers (RPKM 11.0), flower buds (RPKM 9.2) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (28264249..28269928)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene inorganic phosphate transporter 1-6-like Neighboring gene ABC transporter F family member 1 Neighboring gene zinc finger protein 593 Neighboring gene uncharacterized PE-PGRS family protein PE_PGRS54-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABC transporter B family member 1
Names
MDR-like ABC transporter
Os08g0564300
P0705A05.112-1
P0705A05.112-2
P0705A05.112-3
putative P-glycoprotein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    28264249..28269928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794906.2 → XP_015650392.1  ABC transporter B family member 1

    UniProtKB/TrEMBL
    A0A0N7KQB3, B9FYK8, Q7EZL2
    Conserved Domains (2) summary
    cd03249
    Location:432 → 670
    ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
    PTZ00265
    Location:109 → 1325
    PTZ00265; multidrug resistance protein (mdr1); Provisional
Nucleotide Protein
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