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LOC4346214 transcription factor PCF2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346214, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4346214
Gene description
transcription factor PCF2-like
Locus tag
OSNPB_080544800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PCF2; OsJ_027020
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Genomic context

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Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27296218..27298171, complement)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene probable protein NAP1 Neighboring gene uncharacterized LOC4346212 Neighboring gene hydroxymethylglutaryl-CoA synthase Neighboring gene molybdenum cofactor sulfurase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene. Kosugi S, et al. Plant Cell, 1997 Sep. PMID 9338963, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor PCF2
Names
LOC_Os08g43160
P0623F08.31
proliferating cell factor 2
putative transcription factor PCF3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403687.1 → NP_001390616.1  transcription factor PCF2

    Status: VALIDATED

    Source sequence(s)
    AK102666, CI054457, CI093026, CI308309
    UniProtKB/Swiss-Prot
    A2YXQ1, B7E537, O23876, Q6ZBH6

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    27296218..27298171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792844.2 → XP_015648330.1  transcription factor PCF2

    UniProtKB/Swiss-Prot
    Q6ZBH6
    Conserved Domains (1) summary
    cl23822
    Location:76 → 133
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ZBH6.1 GenPept UniProtKB/Swiss-Prot:Q6ZBH6

Gene LinkOut

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Molecular Biology Databases