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LOC4346134 MADS-box transcription factor 7-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346134, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4346134
Gene description
MADS-box transcription factor 7-like
Locus tag
OSNPB_080531700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
M79; AGL6; MADS7; MADS45; OsMADS7; FDRMADS1; OsMADS45; RMADS216
Expression
Biased expression in flower buds (RPKM 168.0), flowers (RPKM 151.2) and 1 other tissue See more
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Genomic context

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Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26507922..26512253)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YciO Neighboring gene squamosa promoter-binding-like protein 16 Neighboring gene MADS-box transcription factor 51-like Neighboring gene glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Characterization of two rice MADS box genes that control flowering time. Kang HG, et al. Mol Cells, 1997 Aug 31. PMID 9339904
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MADS-box transcription factor 7; mADS-box transcription factor 7
Names
LOC_Os08g41950
MADS box protein
MADS-box protein 45
MADS-box protein RMADS216
P0702E04.10
Protein AGAMOUS-like 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403666.1 → NP_001390595.1  mADS-box transcription factor 7

    Status: VALIDATED

    Source sequence(s)
    AK100263, EG714165
    UniProtKB/Swiss-Prot
    A2YXF5, B7EQ75, B8B935, O04063, O24229, O24234, P0C5B0, Q0J466, Q6Q9I1, Q6YZE7, Q7XB96, Q9SWQ5
    UniProtKB/TrEMBL
    D3U2G6

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    26507922..26512253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793276.1 → XP_015648762.1  MADS-box transcription factor 7

    UniProtKB/Swiss-Prot
    Q0J466
    Conserved Domains (2) summary
    cd00265
    Location:2 → 77
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:86 → 175
    K-box; K-box region
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0J466.2 GenPept UniProtKB/Swiss-Prot:Q0J466

Gene LinkOut

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Molecular Biology Databases