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    Os08g0517300 Os08g0517300 [ Oryza sativa Japonica Group ]

    Gene ID: 4346039, updated on 22-Nov-2012
    Gene symbol
    Os08g0517300
    Gene description
    Os08g0517300
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryza sativa Japonica Group (cultivar: Nipponbare)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza
    Location :
    chromosome: 8
    Sequence :
    Chromosome: 8; NC_008401.2 (25765133..25770349, complement)
    See Os08g0517300 in MapViewer

    Chromosome 8 - NC_008401.2Genomic Context describing neighboring genes Neighboring gene Os08g0517200 Neighboring gene Os08g0517350 Neighboring gene Os08g0517500 Neighboring gene Os08g0517600

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan. PMID 18089549.
    2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb. PMID 17210932.
    3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381971.
    4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11. PMID 16100779.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Preferred Names
    Os08g0517300
    Names
    hypothetical protein
    NP_001062242.1
    • Conserved hypothetical protein~contains InterPro domain(s): IPR007087~has GO asignment(s): GO:0003676, GO:0005622, GO:0005634, GO:0008270~supported by AK069175

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_008401.2

      Range
      25765133..25770349, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001068777.1 → NP_001062242.1  Os08g0517300 [Oryza sativa Japonica Group]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q7EZ93
      Conserved Domains (2) summary
      pfam04959
      Location:435 – 564
      Blast Score: 111
      ARS2; Arsenite-resistance protein 2
      pfam12066
      Location:129 – 212
      Blast Score: 282
      DUF3546; Domain of unknown function (DUF3546)
    Nucleotide Protein
    Heading Accession and Version
    genomic AP008214.2 BAF24156.1
    genomic AP004708.3 BAD09973.1
    genomic AP004761.3 BAD09995.1
    genomic CM000145.1 EEE68996.1
    mRNA AK069175.1 BAG91299.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7EZ93.1 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • GEO Profiles
        Related GEO
      • HomoloGene
        Links between HomoloGene and Gene are provided by the HomoloGene group when a gene is included in a HomoloGene record.
      • Map Viewer
        These links are maintained by the Map Viewer group and are provided when a GeneID is annotated on a map for the same species.
      • Nucleotide
        Link to related Nucleotide entry
      • Probe
        Related Probe entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • RefSeq RNAs
        Link to Nucleotide RefSeq RNAs
      • Taxonomy
        Link to related taxonomy entry
      • UniGene
        Links are provided between Gene and UniGene when both databases calculate links to the same mRNA record (gi).

      Links to other resources

      General information

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