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LOC4345652 transcription factor MYB106 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345652, updated on 21-Jun-2023

Summary

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Gene symbol
LOC4345652
Gene description
transcription factor MYB106
Locus tag
OSNPB_080433400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
myb27
Expression
Broad expression in flower buds (RPKM 3.6), roots before flowering (RPKM 1.0) and 6 other tissues See more
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Genomic context

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See LOC4345652 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21019543..21021463, complement)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene GDT1-like protein 5 Neighboring gene uncharacterized LOC4345650 Neighboring gene uncharacterized LOC4345651 Neighboring gene uncharacterized LOC112939887 Neighboring gene NAC domain-containing protein 46 Neighboring gene uncharacterized endoplasmic reticulum membrane protein YGL010W

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transcription factor MYB106
Names
Os08g0433400
P0431A03.19-1
P0431A03.19-2
putative MYB27 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    21019543..21021463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794833.2 → XP_015650319.1  transcription factor MYB106

    UniProtKB/TrEMBL
    A2YVI0, Q0J5H7, Q6ZA94, Q8GUA1
    Conserved Domains (1) summary
    PLN03091
    Location:1 → 219
    PLN03091; hypothetical protein; Provisional
Nucleotide Protein
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