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LOC4341665 two-component response regulator ORR25 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341665, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4341665
Gene description
two-component response regulator ORR25
Locus tag
OSNPB_060647200
Gene type
protein coding
RefSeq status
INFERRED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ORR5; RR25; OsRRB3; OJ1226_A12.26; OJ1226_A12.27
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26450677..26454819)

Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene homogentisate geranylgeranyltransferase, chloroplastic-like Neighboring gene 50S ribosomal protein L35, chloroplastic Neighboring gene lysosomal Pro-X carboxypeptidase Neighboring gene uncharacterized LOC4341670

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two-component response regulator ORR25
Names
LOC_Os06g43910
OSJNBa0062J02.10
OSJNBa0062J02.11
putative response regulator 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421668.1 → NP_001408597.1  two-component response regulator ORR25

    Status: INFERRED

    Source sequence(s)
    AP014962
    UniProtKB/Swiss-Prot
    A1A6A6, Q0DAK5, Q67W50

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

    Range
    26450677..26454819
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026026318.1 → XP_025882103.1  two-component response regulator ORR25

    Conserved Domains (3) summary
    TIGR01557
    Location:186 → 239
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cl26036
    Location:17 → 156
    YesN; Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription]
    cl26809
    Location:263 → 540
    Sec23_BS; Sec23/Sec24 beta-sandwich domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q67W50.1 GenPept UniProtKB/Swiss-Prot:Q67W50

Gene LinkOut

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Molecular Biology Databases