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LOC4334284 probable methyltransferase PMT28 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334284, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4334284
Gene description
probable methyltransferase PMT28
Locus tag
OSNPB_030775200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flowers (RPKM 27.8), flower buds (RPKM 11.8) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (32142122..32146705)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4334282 Neighboring gene putative S-adenosyl-L-methionine-dependent methyltransferase Mvan_0910 Neighboring gene S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like Neighboring gene pentatricopeptide repeat-containing protein At2g22070

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable methyltransferase PMT28
Names
Os03g0775200

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418729.1 → NP_001405658.1  probable methyltransferase PMT28

    Status: VALIDATED

    Source sequence(s)
    AK120397, AP014959
    UniProtKB/TrEMBL
    A0A0N7KI49, B9F5Y8, Q8H8N4

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    32142122..32146705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775724.2 → XP_015631210.1  probable methyltransferase PMT28

    UniProtKB/TrEMBL
    Q8H8N4
    Conserved Domains (1) summary
    pfam03141
    Location:241 → 716
    Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase
Nucleotide Protein
Heading Accession and Version

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