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LOC4333811 alkaline ceramidase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333811, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4333811
Gene description
alkaline ceramidase
Locus tag
OSNPB_030698900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 33.9), flowers (RPKM 30.5) and 6 other tissues See more
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Genomic context

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See LOC4333811 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28014986..28018893, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280482 Neighboring gene zinc finger CCCH domain-containing protein 24-like Neighboring gene oleosin 18 kDa-like Neighboring gene denticleless protein homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to salt stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase
Names
Os03g0698900
alkaline ceramidase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    28014986..28018893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777302.1 → XP_015632788.1  alkaline ceramidase

    UniProtKB/TrEMBL
    A3ALR1, B8AQ01, Q0DPE1, Q84LH5
    Conserved Domains (1) summary
    pfam05875
    Location:8 → 248
    Ceramidase
Nucleotide Protein
Heading Accession and Version

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