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LOC4331778 transcription factor ILI3-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331778, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4331778
Gene description
transcription factor ILI3-like
Locus tag
OSNPB_030171700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ILI3; OsBUL2; OsILI3; BHLH153; OsJ_09590; OsbHLH153
Expression
Biased expression in flowers (RPKM 2.8), flower buds (RPKM 1.6) and 2 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3845483..3846659)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene transcription factor ILI6-like Neighboring gene F-box/kelch-repeat protein At1g74510 Neighboring gene alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial Neighboring gene nuclear pore complex protein NUP96

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of growth IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ILI3
Names
Basic helix-loop-helix protein 153
LOC_Os03g07540
Protein INCREASED LEAF INCLINATION 3
bHLH transcription factor bHLH153
protein BRASSINOSTEROID UP-REGULATED 1-LIKE 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417236.1 → NP_001404165.1  transcription factor ILI3

    Status: VALIDATED

    Source sequence(s)
    CB683392, CI442813, CI613376, CI665897
    UniProtKB/Swiss-Prot
    A0A0P0VTQ4, A2XD15, Q10R47

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    3845483..3846659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774577.2 → XP_015630063.1  transcription factor ILI3

    UniProtKB/Swiss-Prot
    Q10R47
    Conserved Domains (1) summary
    PLN03217
    Location:14 → 90
    PLN03217; transcription factor ATBS1; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10R47.1 GenPept UniProtKB/Swiss-Prot:Q10R47

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