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LOC4330191 ethylene-responsive transcription factor 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330191, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4330191
Gene description
ethylene-responsive transcription factor 5
Locus tag
OSNPB_020655200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Ap25; P0519E06.5; OJ1003_B06.21
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Genomic context

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See LOC4330191 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (26456453..26457980)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor 2 Neighboring gene uncharacterized LOC4330190 Neighboring gene 3-isopropylmalate dehydratase small subunit 3 Neighboring gene deSI-like protein At4g17486

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ethylene-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor 5
Names
Os02g0655200
putative ethylene responsive element binding factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    26456453..26457980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768572.2 → XP_015624058.1  ethylene-responsive transcription factor 5

    UniProtKB/TrEMBL
    A2X7X8, Q6H6I3, Q7XAD6, Q949D2
    Conserved Domains (1) summary
    smart00380
    Location:154 → 213
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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