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LOC4329697 vesicle transport protein SFT2B [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329697, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4329697
Gene description
vesicle transport protein SFT2B
Locus tag
OSNPB_020564500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves after flowering (RPKM 51.2), roots after flowering (RPKM 37.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21432223..21434978, complement)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329695 Neighboring gene CLP protease regulatory subunit CLPX1, mitochondrial Neighboring gene protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial Neighboring gene transcription factor bHLH68

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle transport protein SFT2B
Names
Os02g0564500
P0020C11.16
putative pRGR1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    21432223..21434978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767975.2 → XP_015623461.1  vesicle transport protein SFT2B

    UniProtKB/TrEMBL
    B8ADZ5, B9F0L8, Q0E0B3, Q6Z7E9
    Conserved Domains (1) summary
    pfam04178
    Location:56 → 163
    Got1; Got1/Sft2-like family
Nucleotide Protein
Heading Accession and Version

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