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LOC4329652 protein disulfide isomerase-like 1-3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329652, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4329652
Gene description
protein disulfide isomerase-like 1-3
Locus tag
OSNPB_020554900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PDIL1-3; OsPDIL1-3
Expression
Broad expression in roots before flowering (RPKM 5.0), leaves after flowering (RPKM 3.3) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (20957203..20962944, complement)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329651 Neighboring gene uncharacterized LOC9269000 Neighboring gene GPN-loop GTPase QQT1 Neighboring gene pentatricopeptide repeat-containing protein At2g13600 Neighboring gene NAC domain-containing protein 104

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein disulfide isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to endoplasmic reticulum stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein disulfide isomerase-like 1-3
Names
LOC_Os02g34940
P0470G10.25
putative rotein disulfide isomerase precursor (PDI)
XP_015626051.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416669.1 → NP_001403598.1  protein disulfide isomerase-like 1-3

    Status: VALIDATED

    Source sequence(s)
    AK072252, AK073161, AP014958
    UniProtKB/Swiss-Prot
    A0A0P0VKD4, B7ELS1, Q69ST6

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    20957203..20962944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770565.2 → XP_015626051.1  protein disulfide isomerase-like 1-3

    UniProtKB/Swiss-Prot
    Q69ST6
    Conserved Domains (1) summary
    TIGR01130
    Location:80 → 535
    ER_PDI_fam; protein disulfide isomerase, eukaryotic
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q69ST6.1 GenPept UniProtKB/Swiss-Prot:Q69ST6

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