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LOC4329182 26S proteasome regulatory subunit 6B homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329182, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4329182
Gene description
26S proteasome regulatory subunit 6B homolog
Locus tag
OSNPB_020325100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsRPT3
Expression
Ubiquitous expression in flower buds (RPKM 92.3), leaves after flowering (RPKM 86.1) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (13059108..13063810)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329181 Neighboring gene uncharacterized LOC112937961 Neighboring gene uncharacterized LOC107278532 Neighboring gene uncharacterized LOC9268908

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proteasome-activating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome regulatory subunit 6B homolog
Names
26S protease regulatory subunit 6B homolog
26S proteasome regulatory particle triple-A ATPase subunit3
Os02g0325100
P0476C12.12
putative 26S proteasome regulatory particle triple-A ATPase subunit3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    13059108..13063810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771466.1 → XP_015626952.1  26S proteasome regulatory subunit 6B homolog

    UniProtKB/TrEMBL
    A0A0P0VIC3, B8AGL8, B9F5D5, Q6Z875
    Conserved Domains (1) summary
    PTZ00454
    Location:36 → 419
    PTZ00454; 26S protease regulatory subunit 6B-like protein; Provisional
Nucleotide Protein
Heading Accession and Version

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