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LOC4326208 ADP-ribosylation factor 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326208, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4326208
Gene description
ADP-ribosylation factor 2-like
Locus tag
OSNPB_010265100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ARF
Expression
Biased expression in flowers (RPKM 52.2), flower buds (RPKM 50.5) and 2 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9019847..9024158, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor SPF27 homolog Neighboring gene geranylgeranyl diphosphate reductase Neighboring gene thylakoid ADP,ATP carrier protein, chloroplastic Neighboring gene protein MAIN-LIKE 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP-ribosylation factor 2-like; ADP-ribosylation factor
Names
Os01g0265100
P0453A06.31
P0499C11.13
putative ADP-ribosylation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    9019847..9024158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755827.2 → XP_015611313.1  ADP-ribosylation factor 2-like isoform X1

    UniProtKB/TrEMBL
    A0A0P0V1B9, Q67G16, Q9LDC9
    Conserved Domains (1) summary
    PLN00223
    Location:1 → 181
    PLN00223; ADP-ribosylation factor; Provisional

  2. XM_015755834.2 → XP_015611320.1  ADP-ribosylation factor 2-like isoform X1

    UniProtKB/TrEMBL
    A0A0P0V1B9, Q67G16, Q9LDC9
    Conserved Domains (1) summary
    PLN00223
    Location:1 → 181
    PLN00223; ADP-ribosylation factor; Provisional

  3. XM_015755841.2 → XP_015611327.1  ADP-ribosylation factor isoform X2

    UniProtKB/TrEMBL
    Q67G16
    Conserved Domains (1) summary
    cl21455
    Location:1 → 153
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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