U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4325211 triosephosphate isomerase, cytosolic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325211, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC4325211
Gene description
triosephosphate isomerase, cytosolic-like
Locus tag
OSNPB_010147900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TIM; TPI; Rictpi2; OsJ_00367; P0434B04.9
Expression
Ubiquitous expression in flower buds (RPKM 568.4), flowers (RPKM 530.9) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2589773..2593636, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene factor of DNA methylation 1 Neighboring gene uncharacterized LOC4325210 Neighboring gene E3 ubiquitin-protein ligase PRT6 Neighboring gene uncharacterized LOC4325213

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables triose-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glyceraldehyde-3-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerol catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
triosephosphate isomerase, cytosolic
Names
LOC_Os01g05490
P0416D03.45
Triose-phosphate isomerase
putative triosephosphate isomerase
XP_015621507.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406228.1 → NP_001393157.1  triosephosphate isomerase, cytosolic

    Status: VALIDATED

    Source sequence(s)
    AU029551, AU057073, CA998011, CI005742, CI287329
    UniProtKB/Swiss-Prot
    P48494, Q0JQP8, Q7F7B3
    UniProtKB/TrEMBL
    B8AD93

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    2589773..2593636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766021.2 → XP_015621507.1  triosephosphate isomerase, cytosolic

    UniProtKB/Swiss-Prot
    P48494
    Conserved Domains (1) summary
    PLN02561
    Location:1 → 253
    PLN02561; triosephosphate isomerase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P48494.3 GenPept UniProtKB/Swiss-Prot:P48494

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials