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LOC4324781 NAC domain-containing protein 90 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324781, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4324781
Gene description
NAC domain-containing protein 90
Locus tag
OSNPB_010862800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in roots before flowering (RPKM 60.0), leaves before flowering (RPKM 21.3) and 1 other tissue See more
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37334189..37336229)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324747 Neighboring gene rab-like protein 6 Neighboring gene uncharacterized LOC112939335 Neighboring gene uncharacterized LOC9267953

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAC domain-containing protein 90
Names
NAC transcription factor-like protein
Os01g0862800
P0423B08.14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    37334189..37336229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777197.2 → XP_015632683.1  NAC domain-containing protein 90 isoform X1

    Conserved Domains (1) summary
    pfam02365
    Location:11 → 51
    NAM; No apical meristem (NAM) protein

  2. XM_015777205.2 → XP_015632691.1  NAC domain-containing protein 90 isoform X2

    UniProtKB/TrEMBL
    A0A0P0VAR3, A2WX86, A2ZZU1, Q94CW0
    Conserved Domains (1) summary
    pfam02365
    Location:9 → 141
    NAM; No apical meristem (NAM) protein

RNA

  1. XR_003240238.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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