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    TwdlJ TweedleJ [ Drosophila melanogaster ]

    Gene ID: 43206, updated on 9-May-2012
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    Summary

    Official Symbol
    TwdlJprovided by Flybase
    Official Full Name
    TweedleJprovided by Flybase
    Primary source
    FLYBASE:FBgn0039440
    Locus tag
    Dmel_CG5471
    Gene type
    protein coding
    RNA name
    TweedleJ
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG5471; Dmel\CG5471
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    Genomic context

    Location :
    97C2-97C2
    Sequence :
    Chromosome: 3R; NT_033777.2 (22455678..22456502)
    See TwdlJ in Epigenomics, MapViewer

    Chromosome 3R - NT_033777.2Genomic Context describing neighboring genes Neighboring gene TweedleO Neighboring gene TweedleK Neighboring gene TweedleN Neighboring gene TweedleH

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila. Blanco E, et al. Genome Biol, 2008. PMID 18783608.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. A systems biology analysis of the Drosophila phagosome. Stuart LM, et al. Nature, 2007 Jan 4. PMID 17151602.
    5. Mutation of TweedleD, a member of an unconventional cuticle protein family, alters body shape in Drosophila. Guan X, et al. Proc Natl Acad Sci U S A, 2006 Nov 7. PMID 17075064.

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:68101 BioGRID:66029 Ama    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:77006 CG31373    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:67571 CG5386    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:1455262 CR18854    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:68127 Ets97D    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:67703 RpS3    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:68105 TwdlD    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:60212 TwdlE    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:60833 cenG1A    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:60071 eya    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:57921 l(1)G0334    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:62753 pAbp    BioGRID  PubMed Two-hybrid 
    BioGRID:68101 BioGRID:64836 trn    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    structural constituent of chitin-based cuticle ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    body morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    chitin-based cuticle development ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    extracellular region IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    proteinaceous extracellular matrix ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
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    General protein information

    Preferred Names
    CG5471 gene product from transcript CG5471-RB
    Names
    CG5471-PB
    TwdlJ-PB
    TweedleJ
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.2

      Range
      22455678..22456502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143232.2 → NP_651489.2  TweedleJ [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VBD6
      Related
      FBpp0113030, FBtr0114538
      Conserved Domains (1) summary
      cl11612
      Location:87 – 186
      Blast Score: 250
      DUF243; Domain of unknown function (DUF243)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA BT100085.2 ACX61626.1
    genomic AE014297.2 AAF56606.2
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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