dync1i2.S dynein, cytoplasmic 1, intermediate chain 2 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: dync1i2.S
Official Full Name: dynein, cytoplasmic 1, intermediate chain 2 S homeolog
Primary source: Xenbase:XB-GENE-960818
Locus tag: XELAEV_18047166mg
See related: EnsemblRapid:ENSXLAG00005029882
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ic2; dnci2; dync1i2
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Genomic context

Location:: chromosome: 9_10S

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10S	NC_054388.1 (66483295..66527407)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10S	NC_030741.1 (59822271..59866387)

Chromosome 9_10S - NC_054388.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables dynein heavy chain binding	IEA Inferred from Electronic Annotation more info
enables dynein light chain binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within microtubule-based movement	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within transport along microtubule	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
part_of cytoplasmic dynein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC431853

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091343.1 → NP_001084812.1 uncharacterized protein LOC431853

See identical proteins and their annotated locations for NP_001084812.1

Status: PREDICTED

Source sequence(s)

BC070833

UniProtKB/TrEMBL

A0A974H194, Q5U238, Q6NRC5

Related

ENSXLAP00005089931.1, ENSXLAT00005091607.1

Conserved Domains (4) summary

COG2319
Location:354 → 598

WD40; WD40 repeat [General function prediction only]

pfam11540
Location:136 → 164

Dynein_IC2; Cytoplasmic dynein 1 intermediate chain 2

sd00039
Location:334 → 376

7WD40; WD40 repeat [structural motif]

cl02567
Location:379 → 604

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

66483295..66527407

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041577728.1 → XP_041433662.1 uncharacterized protein LOC431853 isoform X1

UniProtKB/TrEMBL

A0A8J1LVV8, Q5U238

Related

ENSXLAP00005089485.1, ENSXLAT00005091154.1

Conserved Domains (2) summary

COG2319
Location:372 → 616

WD40; WD40 repeat [General function prediction only]

sd00039
Location:352 → 394

7WD40; WD40 repeat [structural motif]
XM_041577729.1 → XP_041433663.1 uncharacterized protein LOC431853 isoform X2

UniProtKB/TrEMBL

A0A8J1LVX9, Q5U238

Related

ENSXLAP00005089606.1, ENSXLAT00005091275.1

Conserved Domains (2) summary

COG2319
Location:364 → 608

WD40; WD40 repeat [General function prediction only]

sd00039
Location:344 → 386

7WD40; WD40 repeat [structural motif]
XM_041577730.1 → XP_041433664.1 uncharacterized protein LOC431853 isoform X4

UniProtKB/TrEMBL

A0A8J1LWB5, Q5U238

Related

ENSXLAP00005089820.1, ENSXLAT00005091496.1

Conserved Domains (2) summary

COG2319
Location:344 → 588

WD40; WD40 repeat [General function prediction only]

sd00039
Location:324 → 366

7WD40; WD40 repeat [structural motif]
XM_018237405.2 → XP_018092894.1 uncharacterized protein LOC431853 isoform X3

UniProtKB/TrEMBL

A0A8J0U0J8, Q5U238
XM_018237406.2 → XP_018092895.1 uncharacterized protein LOC431853 isoform X5

UniProtKB/TrEMBL

A0A8J0TXL0, Q5U238

Related

ENSXLAP00005089707.1, ENSXLAT00005091382.1