U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ARHGEF39 rho guanine nucleotide exchange factor 39 [ Gallus gallus (chicken) ]

Gene ID: 431661, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
ARHGEF39provided by CGNC
Official Full Name
rho guanine nucleotide exchange factor 39provided by CGNC
Primary source
CGNC:1869
See related
Ensembl:ENSGALG00010012334
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C9orf100; CZH9ORF100
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Z
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (9835554..9849220)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (9835554..9849220)

Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107051926 Neighboring gene myosin IIIA-like Neighboring gene mitochondrial ribosomal protein L17 Neighboring gene collagen and calcium binding EGF domains 1 Neighboring gene uncharacterized LOC124417498

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • FLJ14642

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
rho guanine nucleotide exchange factor 39
Names
Rho guanine nucleotide exchange factor (GEF) 39
vav-like protein C9orf100

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195689.2 → NP_001182618.1  rho guanine nucleotide exchange factor 39

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000087
    UniProtKB/TrEMBL
    F1NHV7
    Conserved Domains (2) summary
    pfam00621
    Location:30 → 193
    RhoGEF; RhoGEF domain
    cl17171
    Location:224 → 337
    PH-like; Pleckstrin homology-like domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9835554..9849220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040655632.2 → XP_040511566.1  rho guanine nucleotide exchange factor 39 isoform X1

    UniProtKB/TrEMBL
    F1NHV7
    Conserved Domains (2) summary
    pfam00621
    Location:30 → 193
    RhoGEF; RhoGEF domain
    cl17171
    Location:224 → 337
    PH-like; Pleckstrin homology-like domain

  2. XM_015277357.4 → XP_015132843.1  rho guanine nucleotide exchange factor 39 isoform X1

    UniProtKB/TrEMBL
    F1NHV7
    Related
    ENSGALP00010017163.1, ENSGALT00010029526.1
    Conserved Domains (2) summary
    pfam00621
    Location:30 → 193
    RhoGEF; RhoGEF domain
    cl17171
    Location:224 → 337
    PH-like; Pleckstrin homology-like domain

  3. XM_046905479.1 → XP_046761435.1  rho guanine nucleotide exchange factor 39 isoform X1

    UniProtKB/TrEMBL
    F1NHV7

  4. XM_046905480.1 → XP_046761436.1  rho guanine nucleotide exchange factor 39 isoform X1

    UniProtKB/TrEMBL
    F1NHV7

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9835554..9849220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046935349.1 → XP_046791305.1  rho guanine nucleotide exchange factor 39 isoform X1

    UniProtKB/TrEMBL
    F1NHV7

  2. XM_046935348.1 → XP_046791304.1  rho guanine nucleotide exchange factor 39 isoform X1

    UniProtKB/TrEMBL
    F1NHV7

  3. XM_046935350.1 → XP_046791306.1  rho guanine nucleotide exchange factor 39 isoform X1

    UniProtKB/TrEMBL
    F1NHV7

  4. XM_046935351.1 → XP_046791307.1  rho guanine nucleotide exchange factor 39 isoform X1

    UniProtKB/TrEMBL
    F1NHV7
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.