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    CG42235 [ Drosophila melanogaster ]

    Gene ID: 43136, updated on 10-May-2012
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    Summary

    Official Symbol
    CG42235provided by Flybase
    Primary source
    FLYBASE:FBgn0250757
    Locus tag
    Dmel_CG42235
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG14539; CG31090; CG8932; CG8934; CG8951; CG8957; CG8966; Dmel\CG42235
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    Genomic context

    Location :
    96F8-96F8
    Sequence :
    Chromosome: 3R; NT_033777.2 (21732752..21746768)
    See CG42235 in Epigenomics, MapViewer

    Chromosome 3R - NT_033777.2Genomic Context describing neighboring genes Neighboring gene CG31091 gene product from transcript CG31091-RA Neighboring gene CG31089 gene product from transcript CG31089-RA Neighboring gene ncRNA Neighboring gene CG14546 gene product from transcript CG14546-RA Neighboring gene Cardioacceleratory peptide receptor Neighboring gene ncRNA Neighboring gene CG14540 gene product from transcript CG14540-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Global analysis of trans-splicing in Drosophila. McManus CJ, et al. Proc Natl Acad Sci U S A, 2010 Jul 20. PMID 20615941.
    2. Gene expression in a Drosophila model of mitochondrial disease. Fernández-Ayala DJ, et al. PLoS One, 2010 Jan 6. PMID 20066047.
    3. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    4. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:68039 BioGRID:63546 Atf-2    BioGRID  PubMed Two-hybrid 
    BioGRID:68039 BioGRID:60468 CG13138    BioGRID  PubMed Two-hybrid 
    BioGRID:68039 BioGRID:61255 CG13966    BioGRID  PubMed Two-hybrid 
    BioGRID:68039 BioGRID:57914 HLH4C    BioGRID  PubMed Two-hybrid 
    BioGRID:68039 BioGRID:70027 Pk17E    BioGRID  PubMed Two-hybrid 
    BioGRID:68039 BioGRID:66032 ftz    BioGRID  PubMed Two-hybrid 
    BioGRID:68039 BioGRID:71315 ttk    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    sodium-dependent multivitamin transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    sodium:iodide symporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    vitamin transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    integral to membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
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    General protein information

    Preferred Names
    CG42235 gene product from transcript CG42235-RE
    Names
    CG42235
    CG42235-PA
    CG42235-PB
    CG42235-PC
    CG42235-PD
    CG42235-PE
    Na/iodide symporter-like
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.2

      Range
      21732752..21746768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143190.3 → NP_651447.2  CG42235, isoform E [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VBK0
      Related
      FBpp0288578, FBtr0290138
      Conserved Domains (1) summary
      cd11492
      Location:105 – 645
      Blast Score: 1511
      SLC5sbd_NIS-SMVT; Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain

    2. NM_143189.3 → NP_651446.2  CG42235, isoform D [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VBK1
      Related
      FBpp0288579, FBtr0290139
      Conserved Domains (1) summary
      cd11492
      Location:105 – 646
      Blast Score: 1565
      SLC5sbd_NIS-SMVT; Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain

    3. NM_001144639.2 → NP_001138111.1  CG42235, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z0Q4
      Related
      FBpp0288580, FBtr0290140
      Conserved Domains (1) summary
      cd11492
      Location:105 – 652
      Blast Score: 1692
      SLC5sbd_NIS-SMVT; Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain

    4. NM_001144640.1 → NP_001138112.1  CG42235, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z0Q5
      Related
      FBpp0288581, FBtr0290141
      Conserved Domains (1) summary
      cd11492
      Location:105 – 652
      Blast Score: 1779
      SLC5sbd_NIS-SMVT; Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain

    5. NM_170250.2 → NP_733129.1  CG42235, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VBK2
      Related
      FBpp0288577, FBtr0290137
      Conserved Domains (1) summary
      cd11492
      Location:105 – 644
      Blast Score: 1721
      SLC5sbd_NIS-SMVT; Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014297.2 AAF56534.2
    mRNA BT126016.1 ADY17715.1
    genomic AE014297.2 AAF56533.3
    genomic AE014297.2 ACL83567.1
    genomic AE014297.2 ACL83568.1
    genomic AE014297.2 AAF56532.2
    mRNA BT003514.1 AAO39518.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VBK2.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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