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    CG13625 [ Drosophila melanogaster ]

    Gene ID: 42931, updated on 8-Jan-2012
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    Summary

    Official Symbol
    CG13625provided by Flybase
    Primary source
    FLYBASE:FBgn0039210
    Locus tag
    Dmel_CG13625
    Gene type
    protein coding
    RNA name
    CG13625
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-WO0118547.376; Dmel\CG13625
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    Genomic context

    Location :
    96A9-96A9
    Sequence :
    Chromosome: 3R; NT_033777.2 (20408787..20410855, complement)
    See CG13625 in Epigenomics, MapViewer

    Chromosome 3R - NT_033777.2Genomic Context describing neighboring genes Neighboring gene small nuclear RNA U6 at 96Ac Neighboring gene CG13624 gene product from transcript CG13624-RD Neighboring gene molting defective Neighboring gene Syntaxin 18 Neighboring gene atlastin Neighboring gene CG31127 gene product from transcript CG31127-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human spliceosomal complexes. Herold N, et al. Mol Cell Biol, 2009 Jan. PMID 18981222.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. A Drosophila protein-interaction map centered on cell-cycle regulators. Stanyon CA, et al. Genome Biol, 2004. PMID 15575970.

    See all (11) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:67857 BioGRID:67008 Akt1    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:58382 CG12645    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:66384 CG12811    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:60574 CG17086    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:67566 CG34377    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:67603 CG5376    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:58854 CG8128    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:60332 CG9541    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:58929 CG9911    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:59423 Cda5    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:65121 Cpr72Ea    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:58898 CycD    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:68567 CycG    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:68286 Doa    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:61922 G-oalpha47A    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:66494 KP78b    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:57975 Vsx2    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:67158 ald    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:60495 cdc2    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:67428 cdc2c    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:57745 crn    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:61832 dap    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:57878 dgt4    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:65503 kin17    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:64116 mad2    BioGRID  PubMed Two-hybrid 
    BioGRID:67857 BioGRID:58031 rux    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG13625 gene: The CG13625 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, mosquito, C.elegans, A.thaliana, and rice.

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    nuclear mRNA splicing, via spliceosome IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    catalytic step 2 spliceosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
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    General protein information

    Preferred Names
    CG13625 gene product from transcript CG13625-RA
    Names
    CG13625
    CG13625-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.2

      Range
      20408787..20410855, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143015.2 → NP_651272.1  CG13625 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VC60
      Related
      FBpp0084051, FBtr0084671
      Conserved Domains (1) summary
      pfam09736
      Location:490 – 631
      Blast Score: 325
      Bud13; Pre-mRNA-splicing factor of RES complex
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA AY047559.1 AAK77291.1
    genomic AE014297.2 AAF56315.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q9VC60.1 GenPept
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    Additional Links

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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