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    CG4393 [ Drosophila melanogaster ]

    Gene ID: 42764, updated on 9-May-2012
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    Summary

    Official Symbol
    CG4393provided by Flybase
    Primary source
    FLYBASE:FBgn0039075
    Locus tag
    Dmel_CG4393
    Gene type
    protein coding
    RNA name
    CG4393
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG4393
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    Genomic context

    Location :
    94F1-94F1
    Sequence :
    Chromosome: 3R; NT_033777.2 (19202933..19210499, complement)
    See CG4393 in Epigenomics, MapViewer

    Chromosome 3R - NT_033777.2Genomic Context describing neighboring genes Neighboring gene CG42827 gene product from transcript CG42827-RC Neighboring gene CG42828 gene product from transcript CG42828-RB Neighboring gene CG31515 gene product from transcript CG31515-RB Neighboring gene ncRNA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    4. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747.
    5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.

    See all (10) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:67706 BioGRID:60452 CG5708    BioGRID  PubMed Two-hybrid 
    BioGRID:67706 BioGRID:62101 CG8854    BioGRID  PubMed Two-hybrid 
    BioGRID:67706 BioGRID:57823 N    BioGRID  PubMed Two-hybrid 
    BioGRID:67706 BioGRID:65863 RpL35A    BioGRID  PubMed Two-hybrid 
    BioGRID:67706 BioGRID:64500 RpS9    BioGRID  PubMed Two-hybrid 
    BioGRID:67706 BioGRID:61094 ncm    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

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    General protein information

    Preferred Names
    CG4393 gene product from transcript CG4393-RB
    Names
    CG4393
    CG4393-PB
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.2

      Range
      19202933..19210499, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142886.2 → NP_651143.2  CG4393 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VCM6
      Related
      FBpp0290307, FBtr0301085
      Conserved Domains (5) summary
      cd00204
      Location:43 – 171
      Blast Score: 285
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd09500
      Location:1005 – 1069
      Blast Score: 276
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      smart00454
      Location:1009 – 1075
      Blast Score: 109
      SAM; Sterile alpha motif.
      pfam12796
      Location:53 – 177
      Blast Score: 211
      Ank_2; Ankyrin repeats (3 copies)
      cl00273
      Location:1175 – 1300
      Blast Score: 417
      PH-like; Pleckstrin homology-like domain
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA BT025846.1 ABF85746.1
    genomic AE014297.2 AAF56132.4
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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