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    CG3353 [ Drosophila melanogaster ]

    Gene ID: 42517, updated on 9-May-2012
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    Summary

    Official Symbol
    CG3353provided by Flybase
    Primary source
    FLYBASE:FBgn0038869
    Locus tag
    Dmel_CG3353
    Gene type
    protein coding
    RNA name
    CG3353
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG3353
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    Genomic context

    Location :
    93C6-93C6
    Sequence :
    Chromosome: 3R; NT_033777.2 (17042988..17044511, complement)
    See CG3353 in Epigenomics, MapViewer

    Chromosome 3R - NT_033777.2Genomic Context describing neighboring genes Neighboring gene SNF4/AMP-activated protein kinase gamma subunit Neighboring gene Sensory neuron membrane protein 1 Neighboring gene CG5862 gene product from transcript CG5862-RA Neighboring gene O-GlcNAcase Neighboring gene CG3337 gene product from transcript CG3337-RA Neighboring gene Negative elongation factor A

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. The retinal determination gene eyes absent is regulated by the EGF receptor pathway throughout development in Drosophila. Salzer CL, et al. Genetics, 2010 Jan. PMID 19884307.
    2. Natural variation of ebony gene controlling thoracic pigmentation in Drosophila melanogaster. Takahashi A, et al. Genetics, 2007 Oct. PMID 17660557.
    3. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    4. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (13) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:67487 BioGRID:61521 CG12835    BioGRID  PubMed Two-hybrid 
    BioGRID:67487 BioGRID:60372 CG13114    BioGRID  PubMed Two-hybrid 
    BioGRID:67487 BioGRID:64915 CG3919    BioGRID  PubMed Two-hybrid 
    BioGRID:67487 BioGRID:65639 CG7172    BioGRID  PubMed Two-hybrid 
    BioGRID:67487 BioGRID:77542 Fancd2    BioGRID  PubMed Two-hybrid 
    BioGRID:67487 BioGRID:59949 Hel25E    BioGRID  PubMed Two-hybrid 
    BioGRID:67487 BioGRID:62477 Mlf    BioGRID  PubMed Two-hybrid 
    BioGRID:67487 BioGRID:58698 NFAT    BioGRID  PubMed Two-hybrid 
    BioGRID:67487 BioGRID:59826 RpL40    BioGRID  PubMed Two-hybrid 
    BioGRID:67487 BioGRID:68504 cindr    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG3353 gene: The CG3353 gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, and mosquito.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG3353 gene product from transcript CG3353-RA
    Names
    CG3353
    CG3353-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.2

      Range
      17042988..17044511, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142698.1 → NP_650955.1  CG3353 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VDD0
      Related
      FBpp0083507, FBtr0084108
      Conserved Domains (2) summary
      pfam01753
      Location:87 – 118
      Blast Score: 86
      zf-MYND; MYND finger
      cl02566
      Location:296 – 333
      Blast Score: 120
      SET; SET domain
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA BT010224.1 AAQ23542.1
    genomic AE014297.2 AAF55866.2
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VDD0.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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