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CCDC88B coiled-coil domain containing 88B [ Gallus gallus (chicken) ]

Gene ID: 423410, updated on 5-Mar-2024

Summary

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Symbol
CCDC88Bprovided by CGNC
Full Name
coiled-coil domain containing 88Bprovided by CGNC
Primary source
CGNC:8143
See related
Ensembl:ENSGALG00010016912
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
CCDC88C
Orthologs
human mouse all
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Genomic context

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See CCDC88B in Genome Data Viewer
Location:
chromosome: 5
Exon count:
31
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (43772539..43856662, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (43741323..43825332, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase A5 Neighboring gene C14orf159 homolog Neighboring gene G protein-coupled receptor 4 Neighboring gene protein phosphatase 4 regulatory subunit 3A Neighboring gene uncharacterized LOC121110930

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein light intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton-dependent intracellular transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Daple
Names
coiled-coil domain containing 88C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    43772539..43856662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025151373.3 → XP_025007141.2  protein Daple isoform X3

    Conserved Domains (2) summary
    COG1196
    Location:246 → 612
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:466 → 1341
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_015287749.3 → XP_015143235.2  protein Daple isoform X4

    UniProtKB/TrEMBL
    A0A8V0YYC2
    Related
    ENSGALP00010023786.1, ENSGALT00010040822.1
    Conserved Domains (1) summary
    COG1196
    Location:464 → 1387
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_004941868.5 → XP_004941925.2  protein Daple isoform X1

    UniProtKB/TrEMBL
    A0A8V0YYQ5
    Related
    ENSGALP00010023783.1, ENSGALT00010040819.1
    Conserved Domains (1) summary
    COG1196
    Location:464 → 1387
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_046942416.1 → XP_046798372.1  protein Daple isoform X2

  5. XM_046942417.1 → XP_046798373.1  protein Daple isoform X5

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    43741323..43825332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040672989.2 → XP_040528923.1  protein Daple isoform X3

    Conserved Domains (2) summary
    COG1196
    Location:246 → 612
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:466 → 1341
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_040672990.2 → XP_040528924.1  protein Daple isoform X4

    UniProtKB/TrEMBL
    A0A8V0YYC2
    Conserved Domains (1) summary
    COG1196
    Location:464 → 1387
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_040672988.2 → XP_040528922.1  protein Daple isoform X1

    UniProtKB/TrEMBL
    A0A8V0YYQ5
    Conserved Domains (1) summary
    COG1196
    Location:464 → 1387
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_046919408.1 → XP_046775364.1  protein Daple isoform X2

  5. XM_046919409.1 → XP_046775365.1  protein Daple isoform X5

Nucleotide Protein Strain
Heading Accession and Version

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