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NPAS3 neuronal PAS domain protein 3 [ Gallus gallus (chicken) ]

Gene ID: 423315, updated on 26-May-2016
Symbol
NPAS3provided by CGNC
Full Name
neuronal PAS domain protein 3provided by CGNC
Primary source
CGNC:7599
See related
Ensembl:ENSGALG00000029022
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
103 current Gallus_gallus-5.0 (GCF_000002315.4) 5 NC_006092.4 (35105386..35715453)
102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 5 NC_006092.3 (34440942..34957915)

Chromosome 5 - NC_006092.4Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 5 Neighboring gene A-kinase anchoring protein 6 Neighboring gene uncharacterized LOC107053512 Neighboring gene egl-9 family hypoxia-inducible factor 3

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

Preferred Names
neuronal PAS domain-containing protein 3

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gallus_gallus-5.0 Primary Assembly

Genomic

  1. NC_006092.4 Reference Gallus_gallus-5.0 Primary Assembly

    Range
    35105386..35715453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015287645.1XP_015143131.1  

    Conserved Domains (5) summary
    cd00083
    Location:87144
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:366448
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:185245
    PAS; PAS fold
    pfam08447
    Location:378465
    PAS_3; PAS fold
    pfam14797
    Location:506626
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
  2. XM_015287646.1XP_015143132.1  

    Conserved Domains (5) summary
    cd00083
    Location:57114
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:336418
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:155215
    PAS; PAS fold
    pfam08447
    Location:348435
    PAS_3; PAS fold
    pfam14797
    Location:476596
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
  3. XM_015287647.1XP_015143133.1  

    Conserved Domains (5) summary
    cd00083
    Location:52109
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:331413
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:150210
    PAS; PAS fold
    pfam08447
    Location:343430
    PAS_3; PAS fold
    pfam14797
    Location:471591
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
  4. XM_015287648.1XP_015143134.1  

    Conserved Domains (5) summary
    cd00083
    Location:2279
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:301383
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:120180
    PAS; PAS fold
    pfam08447
    Location:313400
    PAS_3; PAS fold
    pfam14797
    Location:441561
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex