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TSSC4 tumor suppressing subtransferable candidate 4 [ Gallus gallus (chicken) ]

Gene ID: 423092, updated on 3-Apr-2024

Summary

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Symbol
TSSC4provided by CGNC
Full Name
tumor suppressing subtransferable candidate 4provided by CGNC
Primary source
CGNC:4925
See related
Ensembl:ENSGALG00010024188
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (13219956..13224347, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (13188449..13192840, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053397 Neighboring gene potassium voltage-gated channel subfamily Q member 1 Neighboring gene transient receptor potential cation channel, subfamily M, member 5 Neighboring gene CD81 molecule Neighboring gene tetraspanin 32

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
U5 small nuclear ribonucleoprotein TSSC4; protein TSSC4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006470.2 → NP_001006470.2  U5 small nuclear ribonucleoprotein TSSC4

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000214
    UniProtKB/TrEMBL
    A0A8V0ZR81, Q5ZJS5
    Related
    ENSGALP00010035976.1, ENSGALT00010059012.1
    Conserved Domains (1) summary
    pfam15264
    Location:97 → 223
    TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    13219956..13224347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025150692.3 → XP_025006460.2  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81, Q5ZJS5
    Conserved Domains (1) summary
    pfam15264
    Location:97 → 223
    TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

  2. XM_015286600.3 → XP_015142086.2  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81, Q5ZJS5
    Conserved Domains (1) summary
    pfam15264
    Location:97 → 223
    TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

  3. XM_025150691.3 → XP_025006459.2  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81, Q5ZJS5
    Conserved Domains (1) summary
    pfam15264
    Location:97 → 223
    TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

  4. XM_025150693.3 → XP_025006461.2  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81, Q5ZJS5
    Related
    ENSGALP00010035971.1, ENSGALT00010059007.1
    Conserved Domains (1) summary
    pfam15264
    Location:97 → 223
    TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

  5. XM_015286595.4 → XP_015142081.2  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81, Q5ZJS5
    Related
    ENSGALP00010035967.1, ENSGALT00010059003.1
    Conserved Domains (1) summary
    pfam15264
    Location:97 → 223
    TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

  6. XM_040700845.2 → XP_040556779.1  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81, Q5ZJS5
    Related
    ENSGALP00010035977.1, ENSGALT00010059013.1
    Conserved Domains (1) summary
    pfam15264
    Location:97 → 223
    TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

  7. XM_040700847.2 → XP_040556781.1  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81, Q5ZJS5
    Related
    ENSGALP00010035981.1, ENSGALT00010059017.1
    Conserved Domains (1) summary
    pfam15264
    Location:97 → 223
    TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

  8. XM_015286596.4 → XP_015142082.2  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81, Q5ZJS5
    Conserved Domains (1) summary
    pfam15264
    Location:97 → 223
    TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

  9. XM_046941621.1 → XP_046797577.1  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81

  10. XM_040700846.2 → XP_040556780.1  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81, Q5ZJS5
    Conserved Domains (1) summary
    pfam15264
    Location:97 → 223
    TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

  11. XM_046941620.1 → XP_046797576.1  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81
    Related
    ENSGALP00010035964.1, ENSGALT00010059000.1

  12. XM_040700848.2 → XP_040556782.1  protein TSSC4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR81, Q5ZJS5
    Conserved Domains (1) summary
    pfam15264
    Location:97 → 223
    TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    13188449..13192840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046918218.1 → XP_046774174.1  protein TSSC4 isoform X1

  2. XM_046918220.1 → XP_046774176.1  protein TSSC4 isoform X1

  3. XM_046918216.1 → XP_046774172.1  protein TSSC4 isoform X1

  4. XM_046918222.1 → XP_046774178.1  protein TSSC4 isoform X1

  5. XM_046918212.1 → XP_046774168.1  protein TSSC4 isoform X1

  6. XM_046918214.1 → XP_046774170.1  protein TSSC4 isoform X1

  7. XM_046918215.1 → XP_046774171.1  protein TSSC4 isoform X1

  8. XM_046918213.1 → XP_046774169.1  protein TSSC4 isoform X1

  9. XM_046918223.1 → XP_046774179.1  protein TSSC4 isoform X1

  10. XM_046918217.1 → XP_046774173.1  protein TSSC4 isoform X1

  11. XM_046918219.1 → XP_046774175.1  protein TSSC4 isoform X1

  12. XM_046918221.1 → XP_046774177.1  protein TSSC4 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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