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SCUBE2 signal peptide, CUB domain and EGF like domain containing 2 [ Gallus gallus (chicken) ]

Gene ID: 423049, updated on 3-Apr-2024

Summary

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Symbol
SCUBE2provided by CGNC
Full Name
signal peptide, CUB domain and EGF like domain containing 2provided by CGNC
Primary source
CGNC:4399
See related
Ensembl:ENSGALG00010019483
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SCUBE2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (9158308..9196928)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (9125336..9165937)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124418386 Neighboring gene transmembrane protein 41B Neighboring gene DENN domain containing 5A Neighboring gene nuclear receptor interacting protein 2 Neighboring gene uncharacterized LOC121110967

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Hubbard SJ, et al. Genome Res, 2005 Jan. PMID 15590942, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal peptide, CUB and EGF-like domain-containing protein 2
Names
signal peptide, CUB domain, EGF-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9158308..9196928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015286474.4 → XP_015141960.4  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X1

  2. XM_040701526.2 → XP_040557460.2  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X2

  3. XM_015286477.4 → XP_015141963.4  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X6

  4. XM_015286475.4 → XP_015141961.4  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X3

  5. XM_015286476.4 → XP_015141962.4  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X4

  6. XM_420982.7 → XP_420982.4  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Z3Z0, A0A8V0Z3Z9
    Related
    ENSGALP00010027947.1, ENSGALT00010047058.1
    Conserved Domains (3) summary
    smart00179
    Location:6 → 46
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:741 → 852
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl00057
    Location:273 → 322
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

RNA

  1. XR_005860192.2 RNA Sequence

  2. XR_001466551.4 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9125336..9165937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040673553.2 → XP_040529487.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z3Z0
    Conserved Domains (3) summary
    smart00179
    Location:151 → 191
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:886 → 997
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl00057
    Location:418 → 467
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_040673554.2 → XP_040529488.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z3Z0
    Conserved Domains (3) summary
    smart00179
    Location:151 → 191
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:857 → 968
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl00057
    Location:418 → 467
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  3. XM_040673558.2 → XP_040529492.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X6

    Conserved Domains (3) summary
    smart00179
    Location:151 → 191
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:731 → 842
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl00057
    Location:418 → 467
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  4. XM_040673555.2 → XP_040529489.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z3Z0
    Conserved Domains (3) summary
    smart00179
    Location:151 → 191
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:844 → 955
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl00057
    Location:376 → 425
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  5. XM_040673556.2 → XP_040529490.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z3Z0
    Conserved Domains (3) summary
    smart00179
    Location:151 → 191
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:886 → 997
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl00057
    Location:418 → 467
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  6. XM_040673557.2 → XP_040529491.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Z3Z0
    Conserved Domains (3) summary
    smart00179
    Location:6 → 46
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:741 → 852
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl00057
    Location:273 → 322
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

RNA

  1. XR_005850797.2 RNA Sequence

  2. XR_005850796.2 RNA Sequence

Nucleotide Protein Strain
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