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    tinc tincar [ Drosophila melanogaster ]

    Gene ID: 42148, updated on 11-May-2012
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    Summary

    Official Symbol
    tincprovided by Flybase
    Official Full Name
    tincarprovided by Flybase
    Primary source
    FLYBASE:FBgn0261649
    Locus tag
    Dmel_CG31247
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG14319; CG14320; CG31246; CG31247; CG7723; Dmel\CG31247
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    Genomic context

    Location :
    90C7-90C8
    Sequence :
    Chromosome: 3R; NT_033777.2 (13637266..13698229)
    See tinc in Epigenomics, MapViewer

    Chromosome 3R - NT_033777.2Genomic Context describing neighboring genes Neighboring gene CG7357 gene product from transcript CG7357-RA Neighboring gene CG18012 gene product from transcript CG18012-RB Neighboring gene CG33547 gene product from transcript CG33547-RG Neighboring gene CG12347 gene product from transcript CG12347-RA Neighboring gene CG43445 gene product from transcript CG43445-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. An amino acid polymorphism in the couch potato gene forms the basis for climatic adaptation in Drosophila melanogaster. Schmidt PS, et al. Proc Natl Acad Sci U S A, 2008 Oct 21. PMID 18852464.
    2. Accentuate the negative: proteome comparisons using the negative proteome database. Reiter LT, et al. Fly (Austin), 2007 May-Jun. PMID 18820470.
    3. Conditional switches for extracellular matrix patterning in Drosophila melanogaster. Khokhar A, et al. Genetics, 2008 Mar. PMID 18245854.
    4. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    5. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. Tinc has an indispensable role in the normal differentiation of ommatidial cells.
      Title: The transmembrane protein, Tincar, is involved in the development of the compound eye in Drosophila melanogaster.
    2. Expressed specifically in four of the six pairs of cardioblasts in each segment.
      Title: tincar encodes a novel transmembrane protein expressed in the Tinman-expressing cardioblasts of Drosophila.
    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:67179 BioGRID:58700 CG11164    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:625088 CG17162    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:64184 CG42747    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:67331 CG6231    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:61746 CG8170    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:60055 CG9527    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:72555 IM4    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:58403 Or9a    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:70027 Pk17E    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:66927 Surf4    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:59999 chic    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:72787 krz    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:66656 mbo    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:58261 oc    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:61272 rtGEF    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:63436 snama    BioGRID  PubMed Two-hybrid 
    BioGRID:67179 BioGRID:67644 vret    BioGRID  PubMed Two-hybrid 
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    General gene information

    mobile_element

    • Loc: 13663567-13663712 mobile_element_type = transposon:INE-1{}4763

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    regulation of eye photoreceptor cell development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    plasma membrane NAS
    Non-traceable Author Statement
    more info
    		  
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    General protein information

    Preferred Names
    CG31247 gene product from transcript CG31247-RA
    Names
    CG31247-PA
    CG31247-PB
    CG31247-PE
    tinc-PA
    tinc-PB
    tinc-PE
    tincar
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.2

      Range
      13637266..13698229
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_176509.3 → NP_788686.1  tincar, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q86B91
      Related
      FBpp0088712

    2. NM_169780.4 → NP_732278.2  tincar, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q86B91
      Related
      FBpp0088713

    3. NM_176510.4 → NP_788687.3  tincar, isoform E [Drosophila melanogaster]

      Status: REVIEWED

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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014297.2 AAO41573.3
    genomic AE014297.2 AAO41572.1
    mRNA AF509933.1 AAM43929.1
    genomic AE014297.2 AAF55477.3
    Protein Accession Links
    GenPept Link UniProtKB Link
    AAO41573.1 GenPept
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    Additional Links

    Gene LinkOut

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