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    Atg8b Autophagy-specific gene 8b [ Drosophila melanogaster ]

    Gene ID: 42132, updated on 10-May-2012
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    Summary

    Official Symbol
    Atg8bprovided by Flybase
    Official Full Name
    Autophagy-specific gene 8bprovided by Flybase
    Primary source
    FLYBASE:FBgn0038539
    Locus tag
    Dmel_CG12334
    Gene type
    protein coding
    RNA name
    Autophagy-specific gene 8b
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Atg8; ATG8; atg8b; Atg8B; ATG8b; CG12334; Dmel\CG12334
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    Genomic context

    Location :
    90C2-90C2
    Sequence :
    Chromosome: 3R; NT_033777.2 (13550146..13550766, complement)
    See Atg8b in Epigenomics, MapViewer

    Chromosome 3R - NT_033777.2Genomic Context describing neighboring genes Neighboring gene CG7467 gene product from transcript CG7467-RD Neighboring gene Peroxinectin-like Neighboring gene Fsh-Tsh-like receptor Neighboring gene CG14321 gene product from transcript CG14321-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Drosophila EGFR pathway coordinates stem cell proliferation and gut remodeling following infection. Buchon N, et al. BMC Biol, 2010 Dec 22. PMID 21176204.
    2. dDOR is an EcR coactivator that forms a feed-forward loop connecting insulin and ecdysone signaling. Francis VA, et al. Curr Biol, 2010 Oct 26. PMID 20888228.
    3. Autophagy-dependent rhodopsin degradation prevents retinal degeneration in Drosophila. Midorikawa R, et al. J Neurosci, 2010 Aug 11. PMID 20702701.
    4. A genetic screen for modifiers of Drosophila caspase Dcp-1 reveals caspase involvement in autophagy and novel caspase-related genes. Kim YI, et al. BMC Cell Biol, 2010 Jan 25. PMID 20100334.
    5. The Drosophila deoxyhypusine hydroxylase homologue nero and its target eIF5A are required for cell growth and the regulation of autophagy. Patel PH, et al. J Cell Biol, 2009 Jun 29. PMID 19546244.

    See all (25) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:67164 BioGRID:59536 Atg4    BioGRID  PubMed Two-hybrid 
    BioGRID:67164 BioGRID:59443 CG11490    BioGRID  PubMed Two-hybrid 
    BioGRID:67164 BioGRID:64018 DOR    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the Atg8b gene: The Atg8b gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, A.thaliana, and rice.

    Pathways from BioSystems

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    General protein information

    Preferred Names
    CG12334 gene product from transcript CG12334-RA
    Names
    Atg8b-PA
    Autophagy-specific gene 8b
    CG12334-PA
    autophagy related gene 8
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.2

      Range
      13550146..13550766, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142392.2 → NP_650649.1  Autophagy-specific gene 8b [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VEG5
      Related
      FBpp0082957, FBtr0083533
      Conserved Domains (1) summary
      cd01611
      Location:7 – 118
      Blast Score: 472
      GABARAP; Ubiquitin domain of GABA-receptor-associated protein
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014297.2 AAF55459.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VEG5.1 GenPept
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    Additional Links

    Gene LinkOut

      Supplemental Content