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PUS10 pseudouridylate synthase 10 [ Gallus gallus (chicken) ]

Gene ID: 421198, updated on 3-Apr-2024

Summary

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Symbol
PUS10provided by CGNC
Full Name
pseudouridylate synthase 10provided by CGNC
Primary source
CGNC:5926
See related
Ensembl:ENSGALG00010019062
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
CCDC139
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (2150999..2185651, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (2117726..2152380, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110240 Neighboring gene poly(A) polymerase gamma Neighboring gene REL proto-oncogene, NF-kB subunit Neighboring gene uncharacterized LOC121110241 Neighboring gene KIAA1841 Neighboring gene peroxisomal biogenesis factor 13 Neighboring gene protocadherin Fat 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA pseudouridine synthase Pus10
Names
coiled-coil domain containing 139
putative tRNA pseudouridine synthase Pus10
NP_001186378.1
XP_025004389.1
XP_040552908.1
XP_046769438.1
XP_046769439.1
XP_046769440.1
XP_046769441.1
XP_046769442.1
XP_046794613.1
XP_046794614.1
XP_046794615.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199449.2 → NP_001186378.1  tRNA pseudouridine synthase Pus10

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000059
    UniProtKB/TrEMBL
    A0A8V0Z2S0, E1C8Y6
    Related
    ENSGALP00010027515.1, ENSGALT00010046172.1
    Conserved Domains (1) summary
    PRK14554
    Location:289 → 532
    PRK14554; putative pseudouridylate synthase; Provisional

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2150999..2185651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046938658.1 → XP_046794614.1  tRNA pseudouridine synthase Pus10 isoform X2

  2. XM_046938657.1 → XP_046794613.1  tRNA pseudouridine synthase Pus10 isoform X1

  3. XM_046938659.1 → XP_046794615.1  tRNA pseudouridine synthase Pus10 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z8L5
    Related
    ENSGALP00010027510.1, ENSGALT00010046162.1

  4. XM_040696974.2 → XP_040552908.1  tRNA pseudouridine synthase Pus10 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z2R2
    Conserved Domains (1) summary
    cl28383
    Location:258 → 501
    Pus10; tRNA U54 and U55 pseudouridine synthase Pus10 [Translation, ribosomal structure and biogenesis]

  5. XM_025148621.3 → XP_025004389.1  tRNA pseudouridine synthase Pus10 isoform X5

    Conserved Domains (1) summary
    cl28383
    Location:159 → 402
    Pus10; tRNA U54 and U55 pseudouridine synthase Pus10 [Translation, ribosomal structure and biogenesis]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2117726..2152380 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046913483.1 → XP_046769439.1  tRNA pseudouridine synthase Pus10 isoform X2

  2. XM_046913482.1 → XP_046769438.1  tRNA pseudouridine synthase Pus10 isoform X1

  3. XM_046913485.1 → XP_046769441.1  tRNA pseudouridine synthase Pus10 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z8L5

  4. XM_046913484.1 → XP_046769440.1  tRNA pseudouridine synthase Pus10 isoform X3

  5. XM_046913486.1 → XP_046769442.1  tRNA pseudouridine synthase Pus10 isoform X5

Nucleotide Protein
Heading Accession and Version

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