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    MEFV Mediterranean fever [ Homo sapiens (human) ]

    Gene ID: 4210, updated on 19-May-2013
    Official Symbol
    MEFVprovided by HGNC
    Official Full Name
    Mediterranean feverprovided by HGNC
    Primary source
    HGNC:6998
    See related
    Ensembl:ENSG00000103313; HPRD:02012; MIM:608107; Vega:OTTHUMG00000129324
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FMF; MEF; TRIM20
    Summary
    This gene encodes a protein, also known as pyrin or marenostrin, that is an important modulator of innate immunity. Mutations in this gene are associated with Mediterranean fever, a hereditary periodic fever syndrome. [provided by RefSeq, Jul 2008]
    Location :
    16p13.3
    Sequence :
    Chromosome: 16; NC_000016.9 (3292028..3306627, complement)
    See MEFV in Epigenomics, MapViewer

    Chromosome 16 - NC_000016.9Genomic Context describing neighboring genes Neighboring gene olfactory receptor, family 1, subfamily F, member 2 Neighboring gene zinc finger protein 200 Neighboring gene uncharacterized protein FLJ39639 Neighboring gene zinc finger protein 263

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Familial Mediterranean fever

    Summary from GeneReviews: Familial Mediterranean Fever Go to GeneReviews

    Disease Characteristics
    Familial Mediterranean fever (FMF) comprises two phenotypes: type 1 and type 2. FMF type 1 is characterized by recurrent short episodes of inflammation and serositis including fever, peritonitis, synovitis, pleuritis, and, rarely, pericarditis and meningitis. The symptoms and severity vary among affected individuals, sometimes even among members of the same family. Amyloidosis, which can lead to renal failure, is the most severe complication. FMF type 2 is characterized by amyloidosis as the first clinical manifestation of FMF in an otherwise asymptomatic individual.
    Diagnosis Testing
    The diagnosis of FMF is clinical and is suspected in individuals with recurrent episodes of fever associated with abdominal pain (peritonitis) and/or pleuritic pain and/or arthritis (ankle/knee) usually lasting two to three days. A high erythrocyte sedimentation rate (ESR), leukocytosis, and a high serum concentration of fibrinogen are characteristic. Molecular genetic testing is clinically available for MEFV, the only gene in which mutations are currently known to cause FMF. Affected individuals may have biallelic MEFV mutations or a heterozygous MEFV mutation.
    Genetic Counseling
    FMF is usually inherited in an autosomal recessive manner, although recent studies have suggested that some heterozygotes manifest a spectrum of findings from classic FMF to mild FMF. For autosomal recessive FMF: In general, both parents of an affected individual with biallelic MEFV mutations are unaffected heterozygotes. However, in populations with a high carrier rate and/or a high rate of consanguineous marriages, it is possible that one or both parents have biallelic mutations and are affected. Symptomatic heterozygotes have also been reported. Thus, it is appropriate to consider molecular genetic testing of the parents of the proband to establish their genetic status. If both parents are heterozygotes, the risk to sibs of inheriting two mutations and being affected is 25%. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible if the MEFV mutations in the family are known.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    O15553 Q9UP83 COG5    HPRD  PubMed  
    O15553 O43586 PSTPIP1    HPRD  PubMed  
    O15553 Q9ULZ3 PYCARD    HPRD  PubMed  
    BioGRID:110374 BioGRID:115729 COG5    BioGRID  PubMed Two-hybrid 
    BioGRID:110374 BioGRID:118876 PYCARD    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    • Immune System, organism-specific biosystem (from REACTOME)
      Immune System, organism-specific biosystemHumans are exposed to millions of potential pathogens daily, through contact, ingestion, and inhalation. Our ability to avoid infection depends on the adaptive immune system and during the first crit...
    • Inflammasomes, organism-specific biosystem (from REACTOME)
      Inflammasomes, organism-specific biosystemIn contrast to NOD1/2 some NLRPs function as large macromolecular complexes called 'Inflammasomes'. These multiprotein platforms control activation of the cysteinyl aspartate protease caspase-1 and t...
    • Innate Immune System, organism-specific biosystem (from REACTOME)
      Innate Immune System, organism-specific biosystemInnate immunity encompases the nonspecific part of immunity tha are part of an individual's natural biologic makeup
    • NOD pathway, organism-specific biosystem (from WikiPathways)
      NOD pathway, organism-specific biosystemThe NOD (nucleotide-binding oligomerization domain) proteins NOD1 and NOD2 have important roles in innate immunity as sensors of microbial components derived from bacterial peptidoglycan. The importa...
    • NOD-like receptor signaling pathway, organism-specific biosystem (from KEGG)
      NOD-like receptor signaling pathway, organism-specific biosystemSpecific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains mo...
    • NOD-like receptor signaling pathway, conserved biosystem (from KEGG)
      NOD-like receptor signaling pathway, conserved biosystemSpecific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains mo...
    • Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways, organism-specific biosystem (from REACTOME)
      Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways, organism-specific biosystemThe innate immune system is the first line of defense against invading microorganisms, a broad specificity response characterized by the recruitment and activation of phagocytes and the release of an...
    • The NLRP3 inflammasome, organism-specific biosystem (from REACTOME)
      The NLRP3 inflammasome, organism-specific biosystemThe NLRP3 (Cryopyrin) inflammasome is currently the best characterized. It consists of NLRP3, ASC (PYCARD) and procaspase-1; CARD8 (Cardinal) is also suggested to be a component. It is activated by a...

    Markers

    Homology

    Clone Names

    • MGC126560, MGC126586

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    actin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    zinc ion binding NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosol TAS
    Traceable Author Statement
    more info
     
    microtubule IEA
    Inferred from Electronic Annotation
    more info
     
    microtubule associated complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    pyrin
    Names
    pyrin
    marenostrin

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007871.1 RefSeqGene

      Range
      5001..19600
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_190

    mRNA and Protein(s)

    1. NM_000243.2NP_000234.1  pyrin isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AF018080, AJ003147
      Consensus CDS
      CCDS10498.1
      UniProtKB/Swiss-Prot
      O15553
      Related
      ENSP00000219596, OTTHUMP00000159670, ENST00000219596, OTTHUMT00000251464
      Conserved Domains (4) summary
      cd00021
      Location:375412
      Blast Score: 111
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      smart00449
      Location:650774
      Blast Score: 337
      SPRY; Domain in SPla and the RYanodine Receptor.
      cd08321
      Location:688
      Blast Score: 285
      Pyrin_ASC-like; Pyrin Death Domain found in ASC
      pfam13765
      Location:600648
      Blast Score: 197
      PRY; SPRY-associated domain
    2. NM_001198536.1NP_001185465.1  pyrin isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant lacks an alternate in-frame exon and uses an alternate splice junction at the 5' end of an exon, that causes a frameshift. The resulting isoform (2) is shorter and has a distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AF018080, AJ003147, FJ785722, Y14441
      Consensus CDS
      CCDS55981.1
      UniProtKB/TrEMBL
      D2DTW2
      UniProtKB/Swiss-Prot
      O15553
      Conserved Domains (2) summary
      cd00021
      Location:164201
      Blast Score: 97
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd08321
      Location:688
      Blast Score: 271
      Pyrin_ASC-like; Pyrin Death Domain found in ASC

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000016.9 Reference GRCh37.p10 Primary Assembly

      Range
      3292028..3306627, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000148.1 Alternate HuRef

      Range
      3261626..3276174, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018927.1 Alternate CHM1_1.0

      Range
      3227836..3242432, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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