My NCBISign In

Display Settings:

Format

Send to:

Choose Destination

    CG5478 [ Drosophila melanogaster ]

    Gene ID: 41936, updated on 9-May-2012
    Help top of page

    Summary

    Official Symbol
    CG5478provided by Flybase
    Primary source
    FLYBASE:FBgn0038386
    Locus tag
    Dmel_CG5478
    Gene type
    protein coding
    RNA name
    CG5478
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5478
    Help top of page

    Genomic context

    Location :
    89A8-89A8
    Sequence :
    Chromosome: 3R; NT_033777.2 (11758422..11759456, complement)
    See CG5478 in Epigenomics, MapViewer

    Chromosome 3R - NT_033777.2Genomic Context describing neighboring genes Neighboring gene CG31291 gene product from transcript CG31291-RB Neighboring gene CG34275 gene product from transcript CG34275-RA Neighboring gene CG4221 gene product from transcript CG4221-RA Neighboring gene CG34276 gene product from transcript CG34276-RA Neighboring gene Synapse-associated protein 47kD Neighboring gene black pearl Neighboring gene CG31088 gene product from transcript CG31088-RA

    Help top of page

    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
    Helptop of page

    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.
    5. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Hoskins RA, et al. Genome Biol, 2002. PMID 12537574.

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Help top of page

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:66990 BioGRID:63355 CG12491    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:63581 CG13405    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:57693 CG14818    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:65882 CG2926    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:65128 CG4877    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:66467 CG6629    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:63738 CG7967    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:62139 Dyb    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:60112 Nha1    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:64841 SNCF    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:65930 dgrn    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:61072 elfless    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:61516 pgant3    BioGRID  PubMed Two-hybrid 
    BioGRID:66990 BioGRID:68545 spn-F    BioGRID  PubMed Two-hybrid 
    Help top of page

    General protein information

    Preferred Names
    CG5478 gene product from transcript CG5478-RA
    Names
    CG5478
    CG5478-PA
    Help top of page

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.2

      Range
      11758422..11759456, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142256.2 → NP_650513.1  CG5478 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VF09
      Related
      FBpp0082696, FBtr0083242
    Help top of page

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA AY089266.1 AAL90004.1
    genomic AE014297.2 AAF55253.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VF09.1 GenPept
    Help top of page

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...