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RAD51AP1 RAD51 associated protein 1 [ Gallus gallus (chicken) ]

Gene ID: 419042, updated on 5-Mar-2024

Summary

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Symbol
RAD51AP1provided by CGNC
Full Name
RAD51 associated protein 1provided by CGNC
Primary source
CGNC:12989
See related
Ensembl:ENSGALG00010022408
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (73425818..73463426, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (73751596..73785830, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 91 Neighboring gene uncharacterized LOC121106532 Neighboring gene fatty acyl-CoA reductase 2 Neighboring gene uncharacterized LOC121109342 Neighboring gene C12orf4 homolog Neighboring gene fibroblast growth factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RAD51AP1-deficiency in vertebrate cells impairs DNA replication. Parplys AC, et al. DNA Repair (Amst), 2014 Dec. PMID 25288561, Free PMC Article
  2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RAD51-associated protein 1
Names
ggRAD51AP1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396432.1 → NP_001383361.1  RAD51-associated protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) has the short seventh exon.
    Source sequence(s)
    BU113542, BU228307, BX931494, HAEK01019565
    UniProtKB/TrEMBL
    A0A8V0ZHV0
    Conserved Domains (1) summary
    pfam15696
    Location:245 → 283
    RAD51_interact; RAD51 interacting motif

  2. NM_001396433.1 → NP_001383362.1  RAD51-associated protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has the long seventh exon.
    Source sequence(s)
    BU113542, BU228307, BU336139, BX931494, HAEK01019565
    UniProtKB/TrEMBL
    A0A8V0ZHV0, A0A8V0ZQI7
    Related
    ENSGALP00010032910.1, ENSGALT00010054480.1
    Conserved Domains (1) summary
    pfam15696
    Location:246 → 284
    RAD51_interact; RAD51 interacting motif

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    73425818..73463426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040660794.2 → XP_040516728.1  RAD51-associated protein 1 isoform X3

    UniProtKB/Swiss-Prot
    A0A3Q2UEI8, E1C6H8
    UniProtKB/TrEMBL
    A0A8V0ZHV0

  2. XM_040660783.2 → XP_040516717.1  RAD51-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZHV0

  3. XM_025142489.3 → XP_024998257.1  RAD51-associated protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZHV0

  4. XM_015292421.4 → XP_015147907.1  RAD51-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZHV0

RNA

  1. XR_006939395.1 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    73751596..73785830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040660945.2 → XP_040516879.1  RAD51-associated protein 1 isoform X3

    UniProtKB/Swiss-Prot
    A0A3Q2UEI8, E1C6H8
    UniProtKB/TrEMBL
    A0A8V0ZHV0

  2. XM_040660943.2 → XP_040516877.1  RAD51-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZHV0

  3. XM_040660946.2 → XP_040516880.1  RAD51-associated protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZHV0

  4. XM_040660944.2 → XP_040516878.1  RAD51-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZHV0
Nucleotide Protein Strain
Heading Accession and Version

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