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SETDB2 SET domain, bifurcated 2 [ Gallus gallus (chicken) ]

Gene ID: 418866, updated on 22-Nov-2014
Symbol
SETDB2provided by CGNC
Full Name
SET domain, bifurcated 2provided by CGNC
Primary source
CGNC:12768
See related
Ensembl:ENSGALG00000017006
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
See SETDB2 in MapViewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
102 current Gallus_gallus-4.0 (GCF_000002315.3) 1 NC_006088.3 (168503619..168522405)

Chromosome 1 - NC_006088.3Genomic Context describing neighboring genes Neighboring gene cytidine and dCMP deaminase domain containing 1 Neighboring gene calcium binding protein 39-like Neighboring gene uncharacterized LOC101752303 Neighboring gene PHD finger protein 11 Neighboring gene regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1

Genomic Sequence:
NC_006088.3 chromosome 1 reference Gallus_gallus-4.0 Primary Assembly

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

Preferred Names
histone-lysine N-methyltransferase SETDB2
Names
SET domain, bifurcated 2

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 102

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gallus_gallus-4.0 Primary Assembly

Genomic

  1. NC_006088.3 

    Range
    168503619..168522405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004938709.1XP_004938766.1  

    Conserved Domains (3) summary
    smart00317
    Location:378431
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    cd01395
    Location:174234
    HMT_MBD; Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated ...
    pfam05033
    Location:255370
    Pre-SET; Pre-SET motif
  2. XM_004938710.1XP_004938767.1  

    Conserved Domains (3) summary
    smart00317
    Location:378431
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    cd01395
    Location:174234
    HMT_MBD; Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated ...
    pfam05033
    Location:255370
    Pre-SET; Pre-SET motif
  3. XM_417061.3XP_417061.2  

    UniProtKB/TrEMBL
    F1NV79
    Related
    ENSGALP00000027418, ENSGALT00000027470
    Conserved Domains (3) summary
    smart00317
    Location:639699
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    cd01395
    Location:174234
    HMT_MBD; Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated ...
    pfam05033
    Location:255370
    Pre-SET; Pre-SET motif